Sandbox Reserved 1613: Difference between revisions
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==ABC Transporter Family== | ==ABC Transporter Family== | ||
In the 1990's, [https://en.wikipedia.org/wiki/ATP-binding_cassette_transporter ABC binding cassette transporters] became the subject of much discussion as many were found to have links to the inhibition of [https://en.wikipedia.org/wiki/Molecular_diffusion anti-cancer therapies | In the 1990's, [https://en.wikipedia.org/wiki/ATP-binding_cassette_transporter ABC binding cassette transporters] became the subject of much discussion as many were found to have links to the inhibition of [https://en.wikipedia.org/wiki/Molecular_diffusion anti-cancer therapies]. All 48 members of the family were studied and several structural aspects were found to be important to the characterization of [https://en.wikipedia.org/wiki/Transport_protein transporters] in this family. The first was the presence of two [https://en.wikipedia.org/wiki/Nucleotide nucleotide] binding [https://en.wikipedia.org/wiki/Protein_domain domains] (NBD) located in the cytoplasm of all cells which bound and [https://en.wikipedia.org/wiki/Hydrolysis hydrolyzed] [https://en.wikipedia.org/wiki/Adenosine_triphosphate ATP], providing the necessary energy for [https://en.wikipedia.org/wiki/Membrane_transport transport] of the [https://en.wikipedia.org/wiki/Substrate_(chemistry) substrate] to occur. In all 7 subfamilies (A-G) of the ABC family, the NBD's are greatly conserved.\<ref name="Robey">PMID:29643473</ref>. Each transporter of this family is made unique by the structure and form of their specific transmembrane binding domain (TMD). Each of the 48 transporters have 2 transmembrane domains which work to recognize and transport the substrates across the [https://en.wikipedia.org/wiki/Cell_membrane plasma membrane] and out of the cell. The [https://en.wikipedia.org/wiki/Amino_acid residues] in the TMD provide the transporters each with specific substrates which they can transport. They also allow for the coupling of transport with [https://en.wikipedia.org/wiki/ATP_hydrolysis ATP hydrolysis] to transport molecules regardless of the [https://en.wikipedia.org/wiki/Molecular_diffusion concentration gradient]. | ||
===Specific Members of the Family=== | ===Specific Members of the Family=== | ||
As previously mentioned, 19 of the 48 members of the transporter family are involved in chemotherapeutic removal from the cell. Of these, three, <scene name='83/832939/Abcb1/1'>ABCB1</scene>, ABCG2 and <scene name='83/832939/Abcc1/1'>ABCC1</scene> were identified for further study and comparison of [https://en.wikipedia.org/wiki/Chemical_structure structure] due to their function as multi-drug transporters. The differences in their structures provided valuable information for scientific research into their substrate binding processes. | As previously mentioned, 19 of the 48 members of the transporter family are involved in chemotherapeutic removal from the cell. Of these, three, <scene name='83/832939/Abcb1/1'>ABCB1</scene>, ABCG2 and <scene name='83/832939/Abcc1/1'>ABCC1</scene> were identified for further study and comparison of [https://en.wikipedia.org/wiki/Chemical_structure structure] due to their function as multi-drug transporters<ref name="Robey">PMID:29643473</ref>. The differences in their structures provided valuable information for scientific research into their substrate binding processes. | ||
==General Structure== | ==General Structure== | ||
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[[Image:Ligand_Interactions_6ffc.png|400 px|right|thumb|Figure 1: MZ29 bound to cavity 1 of ABCG2 (6ffc). Two MZ29 are shown in sticks and are colored by element. Hydrophobic interactions between the surface of cavity 1 and MZ29 are shown in green.]] | [[Image:Ligand_Interactions_6ffc.png|400 px|right|thumb|Figure 1: MZ29 bound to cavity 1 of ABCG2 (6ffc). Two MZ29 are shown in sticks and are colored by element. Hydrophobic interactions between the surface of cavity 1 and MZ29 are shown in green.]] | ||
Multidrug Transporter ABCG2 is a <scene name='83/832937/Dimer/1'>dimer</scene> that consists of two [https://en.wikipedia.org/wiki/Cavity cavities] separated by a <scene name='83/832937/Leucine_plug/4'>leucine plug</scene>. Cavity 1 is a binding pocket open to the [https://en.wikipedia.org/wiki/Cytoplasm cytoplasm] and the inner leaflet of the plasma membrane. Its shape is suitable to bind flat, hydrophobic and polycyclic substrates. Many of its amino acids residues form hydrophobic interactions with the bound substrate, as shown in green in '''Figure 1'''. Cavity 2 is located above the leucine plug. It is empty until a <scene name='83/832937/Atp_and_mg_bound_to_abcg2/4'>magnesium ion and ATP</scene> are bound to ABCG2. Its <scene name='83/832937/Cysteine_disulfide_bridges/5'>inter- and intra-disulfides</scene> (yellow is inter- and intra-molecular disulfides, golden is intra-molecular only) promote the release of the substrate from the cavity into the extracellular space. | Multidrug Transporter ABCG2 is a <scene name='83/832937/Dimer/1'>dimer</scene> that consists of two [https://en.wikipedia.org/wiki/Cavity cavities] separated by a <scene name='83/832937/Leucine_plug/4'>leucine plug</scene>. Cavity 1 is a binding pocket open to the [https://en.wikipedia.org/wiki/Cytoplasm cytoplasm] and the inner leaflet of the plasma membrane. Its shape is suitable to bind flat, hydrophobic and polycyclic substrates<ref name="Manolaridis">PMID:30405239</ref>. Many of its amino acids residues form hydrophobic interactions with the bound substrate, as shown in green in '''Figure 1'''. Cavity 2 is located above the leucine plug. It is empty until a <scene name='83/832937/Atp_and_mg_bound_to_abcg2/4'>magnesium ion and ATP</scene> are bound to ABCG2. Its <scene name='83/832937/Cysteine_disulfide_bridges/5'>inter- and intra-disulfides</scene> (yellow is inter- and intra-molecular disulfides, golden is intra-molecular only) promote the release of the substrate from the cavity into the extracellular space. | ||
One interesting feature of the NBD's is the fact that they remain in contact with one another even without a bound substrate. This makes the ABCG2 transporter unique and provides greater substrate specificity as the entrance to the transporter is not as globular as either ABCB1 or ABCC1. The entrance from the cytoplasm to the transporter is a [https://en.wikipedia.org/wiki/Hydrophobe hydrophobic] membrane entrance lined by <scene name='83/832939/Lining_of_entrance_of_nbd/1'>residues A397, V401, L405, L539, I543 and T547</scene> in both [https://en.wikipedia.org/wiki/Monomer monomers]. | One interesting feature of the NBD's is the fact that they remain in contact with one another even without a bound substrate. This makes the ABCG2 transporter unique and provides greater substrate specificity as the entrance to the transporter is not as globular as either ABCB1 or ABCC1. The entrance from the cytoplasm to the transporter is a [https://en.wikipedia.org/wiki/Hydrophobe hydrophobic] membrane entrance lined by <scene name='83/832939/Lining_of_entrance_of_nbd/1'>residues A397, V401, L405, L539, I543 and T547</scene> in both [https://en.wikipedia.org/wiki/Monomer monomers]. | ||
Dimerization of ABCG2 was originally thought to be achieved with the help of the <scene name='83/832939/Disproved_dimerization_process/1'>406xxx410 structural motif</scene> in each of the two domains but Cryo-EM showed that the [https://en.wikipedia.org/wiki/Sequence_motif motifs] were on opposite sides of the protein. | Dimerization of ABCG2 was originally thought to be achieved with the help of the <scene name='83/832939/Disproved_dimerization_process/1'>406xxx410 structural motif</scene> in each of the two domains but Cryo-EM showed that the [https://en.wikipedia.org/wiki/Sequence_motif motifs] were on opposite sides of the protein. | ||
Revision as of 10:58, 21 April 2020
ABCG2 Transporter Protein
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References
Student Contributors
Shelby Skaggs, Samuel Sullivan, Jaelyn Voyles
