5fb4

Crystal structure of the bacteriophage phi29 tail knob protein gp9 truncation variant

spinqualitylabelsall models 5fb4, resolution 2.04Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 5fb4 is a 3 chain structure with sequence from Bpph2. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: PEG Related: 5fb5 Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function [DIT9_BPPH2] Forms the distal part (knob) of the tail tube. Publication Abstract from PubMed Most bacteriophages are tailed bacteriophages with an isometric or a prolate head attached to a long contractile, long non-contractile, or short non-contractile tail. The tail is a complex machine that plays a central role in host cell recognition and attachment, cell wall and membrane penetration, and viral genome ejection. The mechanisms involved in the penetration of the inner host cell membrane by bacteriophage tails are not well understood. Here we describe structural and functional studies of the bacteriophage varphi29 tail knob protein gene product 9 (gp9). The 2.0 A crystal structure of gp9 shows that six gp9 molecules form a hexameric tube structure with six flexible hydrophobic loops blocking one end of the tube before DNA ejection. Sequence and structural analyses suggest that the loops in the tube could be membrane active. Further biochemical assays and electron microscopy structural analyses show that the six hydrophobic loops in the tube exit upon DNA ejection and form a channel that spans the lipid bilayer of the membrane and allows the release of the bacteriophage genomic DNA, suggesting that cell membrane penetration involves a pore-forming mechanism similar to that of certain non-enveloped eukaryotic viruses. A search of other phage tail proteins identified similar hydrophobic loops, which indicates that a common mechanism might be used for membrane penetration by prokaryotic viruses. These findings suggest that although prokaryotic and eukaryotic viruses use apparently very different mechanisms for infection, they have evolved similar mechanisms for breaching the cell membrane. The bacteriophage varphi29 tail possesses a pore-forming loop for cell membrane penetration.,Xu J, Gui M, Wang D, Xiang Y Nature. 2016 Jun 15;534(7608):544-7. doi: 10.1038/nature18017. PMID:27309813 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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