Antibody 3D structures: Difference between revisions

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Joel L. Sussman (talk | contribs)
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**[[3o6l]], [[3o6m]] - mFab 11H6H1 anti-HIV + Tat peptide<br />
**[[3o6l]], [[3o6m]] - mFab 11H6H1 anti-HIV + Tat peptide<br />
**[[1svz]] - mFab anti-HIV + HIV-2 protease peptide<br />
**[[1svz]] - mFab anti-HIV + HIV-2 protease peptide<br />


*Human Fab: protein complex
*Human Fab: protein complex
Line 391: Line 392:
**[[4r4n]], [[4r4f]] - hFab anti-HIV + envelope glycoprotein gp120 + M48U1 peptide<br />
**[[4r4n]], [[4r4f]] - hFab anti-HIV + envelope glycoprotein gp120 + M48U1 peptide<br />
**[[3lqa]], [[2qad]] - hFab anti-HIV + CD4 + gp41<br />
**[[3lqa]], [[2qad]] - hFab anti-HIV + CD4 + gp41<br />


*Mouse Fab: protein higher complexes
*Mouse Fab: protein higher complexes
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**[[6jmq]], [[6jmr]] – mFab + large neutral amino acid transporter + 4f2 cell-surface antigen<br />
**[[6jmq]], [[6jmr]] – mFab + large neutral amino acid transporter + 4f2 cell-surface antigen<br />
**[[6qno]] - mFab + guanine nucleotide-binding protein + transducin + rhodopsin – Cryo EM<br />
**[[6qno]] - mFab + guanine nucleotide-binding protein + transducin + rhodopsin – Cryo EM<br />


*Full Immunoglobulin
*Full Immunoglobulin
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**[[1f6a]] -  hFc  IgE + high-affinity receptor Fc (ε) RI (α)<br />
**[[1f6a]] -  hFc  IgE + high-affinity receptor Fc (ε) RI (α)<br />
**[[1fp5]] - hFc IgE C ε 3-C ε 4<br />
**[[1fp5]] - hFc IgE C ε 3-C ε 4<br />


*Fv Fragments
*Fv Fragments
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**[[1qle]] - mFv + cytochrome c oxidase<br />
**[[1qle]] - mFv + cytochrome c oxidase<br />
**[[6oik]] - mFv + AChR + guanine nucleotide-binding protein + transducin – Cryo EM<br />
**[[6oik]] - mFv + AChR + guanine nucleotide-binding protein + transducin – Cryo EM<br />


* Single chain variable fragment (scFv)  
* Single chain variable fragment (scFv)  
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**[[1p4i]] – mscFv (mutant)<br />
**[[1p4i]] – mscFv (mutant)<br />
**[[4p49]], [[4p48]], [[4ouo]], [[5vf6]] – scFv - chicken<br />
**[[4p49]], [[4p48]], [[4ouo]], [[5vf6]] – scFv - chicken<br />


* Single chain variable fragment complex
* Single chain variable fragment complex
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**[[1fo0]], [[1kj2]], [[1nam]] – mscFv + TCR + MHC + peptide<br />
**[[1fo0]], [[1kj2]], [[1nam]] – mscFv + TCR + MHC + peptide<br />
**[[5d9q]] – hscFv + antibody + gp120 + gp40<br />
**[[5d9q]] – hscFv + antibody + gp120 + gp40<br />


* Single chain variable fragment complex with small molecule
* Single chain variable fragment complex with small molecule
Line 476: Line 483:
**[[4lar]] – hscFv + dexedrine<br />
**[[4lar]] – hscFv + dexedrine<br />
**[[4las]] – hscFv + amphetamine derivative<br />
**[[4las]] – hscFv + amphetamine derivative<br />


* Single chain variable fragment complex with peptide
* Single chain variable fragment complex with peptide
Line 501: Line 509:
**[[6itp]], [[6itq]] – cVHH anti-cortisol<br />
**[[6itp]], [[6itq]] – cVHH anti-cortisol<br />
**[[6t2j]] – syVHH <br />
**[[6t2j]] – syVHH <br />


*VHH binary complexes
*VHH binary complexes
Line 549: Line 558:
**[[6knm]] - cVHH + apelin receptor<br />
**[[6knm]] - cVHH + apelin receptor<br />
**[[6sc5]], [[6sc6]], [[6sc7]], [[6sc8]], [[6sc9]] – syVHH + RNF31<br />
**[[6sc5]], [[6sc6]], [[6sc7]], [[6sc8]], [[6sc9]] – syVHH + RNF31<br />


*VHH ternary complexes
*VHH ternary complexes
Line 564: Line 574:
**[[6h7o]], [[6ibl]] – cVHH + thioredoxin + adrenergic receptor<br />
**[[6h7o]], [[6ibl]] – cVHH + thioredoxin + adrenergic receptor<br />


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