Jmol/Interactivity: Difference between revisions

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Karsten Theis (talk | contribs)
Editor, Macro, Print3D
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Karsten Theis (talk | contribs)
Editor, Macro, Print3D
4,602 edits
No edit summary
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<StructureSection load='1d9z' size='340' side='right' caption='Structure of UvrB in complex with ATP' scene=''>
<StructureSection load='1d9z' size='340' side='right' caption='Structure of UvrB in complex with ATP' scene=''>
==Interactive Jmol elements==
==Interactive Jmol elements==
Some pages contain buttons, radio buttons and other elements that allow the reader to manipulate the 3D Jmol scene by clicking on them. Here is an example:
Some pages contain buttons, radio buttons and other elements that allow the reader to manipulate the 3D Jmol scene by clicking on them.  
 
===Button===
This button loads a different molecule and scene, and makes sure waters and hidden and zshade is turned off:


<jmol>
<jmol>
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</nowiki>
</nowiki>


===Link===
You can associate a couple of commands with a green link (instead of the usual behavior of a green link to load a new scene). For example, the link below make parts of the structure "blink":


The elements below make parts of the structure "blink":
To show ligand(s), click on the sun symbolin the parentheses (<jmol>
 
To show liagnd(s), click on the sun symbolin the parentheses (<jmol>
   <jmolLink>
   <jmolLink>
     <script> select ligand; selectionHalos ON; delay 0.5;selectionHalos OFF;</script>
     <script> select ligand; selectionHalos ON; delay 0.5;selectionHalos OFF;</script>
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</nowiki>
</nowiki>


===Check box===
This checkbox hides the ligand when checked.
<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>hide ligand or hidden</scriptWhenChecked>
    <scriptWhenUnchecked>hide hidden and not ligand</scriptWhenUnchecked>
    <checked>false</checked>
    <text>hide ligand</text>
  </jmolCheckbox>
</jmol>




N terminus(<jmol><jmolLink><script> select 1.CA; selectionHalos ON; delay 0.5;selectionHalos OFF;</script><text>☼</text></jmolLink> </jmol>)
N terminus(<jmol><jmolLink><script> select 1.CA; selectionHalos ON; delay 0.5;selectionHalos OFF;</script><text>☼</text></jmolLink> </jmol>)
</StructureSection>
</StructureSection>

Revision as of 12:12, 19 June 2020

Structure of UvrB in complex with ATP

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

Karsten Theis

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