|
|
| Line 12: |
Line 12: |
| </jmolButton> | | </jmolButton> |
| </jmol> | | </jmol> |
|
| |
| The following code was used to build the button and make it work:
| |
| <nowiki>
| |
| <jmol>
| |
| <jmolButton>
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| <script>script /scripts/37/376372/Overall/3.spt;
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| hide water; set zshade off</script>
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| <text>Lysozyme</text>
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| </jmolButton>
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| </jmol>
| |
| </nowiki>
| |
|
| |
| ===Link===
| |
| You can associate a couple of commands with a green link (instead of the usual behavior of a green link to load a new scene). For example, the link below make parts of the structure "blink":
| |
|
| |
| To show ligand(s), click on the sun symbol in the parentheses (<jmol>
| |
| <jmolLink>
| |
| <script> select ligand; selectionHalos ON; delay 0.5;selectionHalos OFF;</script>
| |
| <text>☼</text>
| |
| </jmolLink>
| |
| </jmol>)
| |
|
| |
| <nowiki>
| |
| (<jmol>
| |
| <jmolLink>
| |
| <script> select ligand; selectionHalos ON;
| |
| delay 0.5; selectionHalos OFF;</script>
| |
| <text>☼</text>
| |
| </jmolLink>
| |
| </jmol>)
| |
| </nowiki>
| |
|
| |
| ===Check box===
| |
|
| |
| This checkbox shows the ligand only when checked.
| |
|
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| <jmol>
| |
| <jmolCheckbox>
| |
| <scriptWhenUnChecked>hide ligand or hidden</scriptWhenChecked>
| |
| <scriptWhenchecked>hide hidden and not ligand</scriptWhenUnchecked>
| |
| <checked>true</checked>
| |
| <text>ligand</text>
| |
| </jmolCheckbox>
| |
| </jmol>
| |
|
| |
| <nowiki>
| |
| <jmol>
| |
| <jmolCheckbox>
| |
| <scriptWhenChecked>hide ligand or hidden</scriptWhenChecked>
| |
| <scriptWhenUnchecked>hide hidden and not ligand</scriptWhenUnchecked>
| |
| <checked>true</checked>
| |
| <text>ligand</text>
| |
| </jmolCheckbox>
| |
| </jmol>
| |
| </nowiki>
| |
|
| |
| ===Radio button===
| |
|
| |
| This set of buttons selects one side chain to be shown (or none).
| |
|
| |
| <jmol>
| |
| <jmolRadioGroup>
| |
| <item>
| |
| <script>select sidechain; spacefill off; select sidechain and 35 ; spacefill on</script>
| |
| <text>Residue 35</text>
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| <checked>false</checked>
| |
| </item>
| |
| <item>
| |
| <script>select sidechain; spacefill off; select sidechain and 52 ; spacefill on</script>
| |
| <text>Residue 52</text>
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| <checked>false</checked>
| |
| </item>
| |
| <item>
| |
| <script>select sidechain; spacefill off</script>
| |
| <text>No side chains</text>
| |
| <checked>true</checked>
| |
| </item>
| |
| </jmolRadioGroup>
| |
| </jmol>
| |
|
| |
| <nowiki>
| |
| <jmol>
| |
| <jmolRadioGroup>
| |
| <item>
| |
| <script>select sidechain; spacefill off; select sidechain and 35 ; spacefill on</script>
| |
| <text>Residue 35</text>
| |
| <checked>false</checked>
| |
| </item>
| |
| <item>
| |
| <script>select sidechain; spacefill off; select sidechain and 52 ; spacefill on</script>
| |
| <text>Residue 52</text>
| |
| <checked>false</checked>
| |
| </item>
| |
| <item>
| |
| <script>select sidechain; spacefill off</script>
| |
| <text>No side chains</text>
| |
| <checked>true</checked>
| |
| </item>
| |
| </jmolRadioGroup>
| |
| </jmol>
| |
| </nowiki>
| |
<StructureSection load='1d9z' size='340' side='right' caption='Structure of UvrB in complex with ATP' scene=>
Interactive Jmol elements
Some pages contain buttons, radio buttons and other elements that allow the reader to manipulate the 3D Jmol scene by clicking on them.
Button
This button loads a different molecule and scene, and makes sure waters and hidden and zshade is turned off:
