Practical Guide to Homology Modeling: Difference between revisions
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Also notice the '''Region''' range, which tell you how many of your query residues align with the hit. Compare this to the full length of your query sequence. | Also notice the '''Region''' range, which tell you how many of your query residues align with the hit. Compare this to the full length of your query sequence. | ||
If you click the ''Download'' button in the list of hits, you will get the CIF file. If you need [[PDB file format]], click on the PDB ID code and open the ''Download'' menu on that single entry page to get all format options. | |||
<!--For example, “Identities: 355/1045 (34%)” means that 1,045 residues of your query sequence align to the hit with 34% sequence identity (355 identical residues in the alignment). Knowing that my query had length 1,170 residues, I can see that this potential template for a homology model would enable me to model 1,045/1,170 = 89% of my query sequence. Quite often the alignment would span a much smaller portion of the full-length sequence. | <!--For example, “Identities: 355/1045 (34%)” means that 1,045 residues of your query sequence align to the hit with 34% sequence identity (355 identical residues in the alignment). Knowing that my query had length 1,170 residues, I can see that this potential template for a homology model would enable me to model 1,045/1,170 = 89% of my query sequence. Quite often the alignment would span a much smaller portion of the full-length sequence. | ||
