Cavity programs: Difference between revisions
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==Jmol== | ==Jmol== | ||
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<span style="font-size:120%; font-weight:bold;">Jmol:</span><br>Interior (buried) cavities in the [[SARS-CoV-2 spike protein priming by furin|SARS-CoV-2 spike protein]] ([[6zgi]]) rendered as isosurfaces by Jmol using a cavity probe radius of 2.6 Å and a surface smoothing probe radius of 10 Å. | <span style="font-size:120%; font-weight:bold;">Jmol:</span><br>Interior (buried) cavities in the [[SARS-CoV-2 spike protein priming by furin|SARS-CoV-2 spike protein]] ([[6zgi]]) rendered as isosurfaces by Jmol using a cavity probe radius of 2.6 Å and a surface smoothing probe radius of 10 Å. | ||
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[[Image:Jmol-cavities-6zgi.png| | [[Image:Jmol-cavities-6zgi-2.5-10.png|200px]] | ||
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[[Image:Jmol-cavities-6zgi-1.4-10.png|200px]] | |||
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[[Jmol]] can identify and display pockets and cavities as isosurfaces. Examples are shown at [[Jmol/Cavities pockets and tunnels]], where you will also find explanations of the interior cavity and pocket commands. | [[Jmol]] can identify and display pockets and cavities as isosurfaces. Examples are shown at [[Jmol/Cavities pockets and tunnels]], where you will also find explanations of the interior cavity and pocket commands. | ||
