User:Wayne Decatur: Difference between revisions
From Proteopedia
Jump to navigationJump to search
| Line 85: | Line 85: | ||
* [[Help:Editing]] | * [[Help:Editing]] | ||
* [[Proteopedia:How to Make a Page]] | * [[Proteopedia:How to Make a Page]] | ||
* [[Proteopedia:About]] | * [[Proteopedia:About]] | ||
* [[Proteopedia:Policy]] | * [[Proteopedia:Policy]] | ||
* [[Proteopedia:Facebook]] | * [[Proteopedia:Facebook]] | ||
* [[Proteopedia:Twitter]] | * [[Proteopedia:Twitter]] | ||
* [[Proteopedia:Macros]] | |||
* [[Proteopedia:DIY:Macros]] | |||
* [[Proteopedia:Cookbook]] | |||
* [[Combine Proteopedia scenes with inline JSmol scripting]] | |||
* [[Proteopedia:DIY:Templates]] | |||
* [[Jmol]] | * [[Jmol]] | ||
* [[DRuMS]] | * [[DRuMS]] | ||
Revision as of 01:09, 4 January 2021
Wayne Decatur
Research Associate in the Department of Biochemistry and Molecular Biology at the SUNY Upstate Medical University.
Member of the Proteopedia Editorial Board.
Interests:
small RNAs and their associated ribonucleoprotein complexes; the Ribosome; RNA modification; catalytic RNAs; homing endonucleases, group I introns; leucine-rich repeats; hormones and their receptors.
Wayne's publications listed at the the U.S. National Library of Medicine's PubMed database
email: 
Some Proteopedia Pages to Which I've Contributed
Molecules: Topic Pages
- The Ribosome
- Large Ribosomal Subunit of Haloarcula marismortui
- Interactions between Antibiotics and the Ribosome
- Azithromycin bound to the Large Ribosomal Subunit of Haloarcula marismortui
- Suppression of RNA Silencing by Viruses
- Plant Viral Protein p19 Suppression of RNA Silencing
- Tomato aspermy virus protein 2b Suppression of RNA Silencing
- Flock house virus B2 protein Suppression of RNA Silencing
- Green Fluorescent Protein
- DEAD-box helicase protein Vasa
- RecG in complex with a synthetic three-way DNA junction resembling a stalled replication fork
- Escherichia coli LepA, the ribosomal back translocase
- The Pore Forming Toxin, α-hemolysin
- The Glutamate Receptor (GluA2)
- Luciferase
- Citrate Synthase
- Lamprey Variable Lymphocyte Receptor
- Leucine-Rich Repeat Proteins
- Toll-like Receptors
- Hormone
- Human Follicle-Stimulating Hormone Complexed with its Receptor
- G protein-coupled receptor
- Forkhead box protein M1
- Kink-turn motif
- Pseudouridine
- Zika virus subgenomic flaviviral RNA
- RNase P
- yeast RNase P
Topic Pages - Structural Bioinformatics
- About Macromolecular Structure
- Alternate locations
- altloc
- Cation-pi interactions
- Complexes
- Cystine
- Getting Unremediated PDB Files
- Net charge
- Pseudoenzyme
- Interface analysis servers
- Isoelectric point
- Standard Residues and Non-Standard Residues
Topic Pages - Education
- Teaching Strategies Using Proteopedia
- Teaching Scenes, Tutorials, and Educators' Pages
- Proteopedia:Practical Guide to Advanced Proteopedia Authoring and Its Use in Teaching
- Link above is the online version of Part C of a book chapter entitled Publishing in Proteopedia: The Guide by Jaime Prilusky, Wayne Decatur, and Eric Martz."
- Full Reference: Jaime Prilusky, Wayne Decatur, Eric Martz. Publishing in Proteopedia: The Guide, Advancing Methods for Biomolecular Crystallography. In NATO Science for Peace and Security Series A: Chemistry and Biology 2013, pp 277-295 [doi:10.1007/978-94-007-6232-9_24]
- High school teachers' resources
Meta Pages
- Help:Editing
- Proteopedia:How to Make a Page
- Proteopedia:About
- Proteopedia:Policy
- Proteopedia:Facebook
- Proteopedia:Twitter
- Proteopedia:Macros
- Proteopedia:DIY:Macros
- Proteopedia:Cookbook
- Combine Proteopedia scenes with inline JSmol scripting
- Proteopedia:DIY:Templates
- Jmol
- DRuMS
- Wanted pages
- Pages needing expansion
- Pages needing improvement
Workshops, Lectures, and Seminars
- UPSTATE MEDICAL GS647-021 Nanocourse: Structuring against Coronavirus (April-May) 2020
- UNH BIOCHEM833 Structural Analysis for Non-Structural Biologists Workshop Session Fall Semester (November 8th) 2012
- UNH BIOCHEM833 Structural Analysis for Non-Structural Biologists Introductory Lecture Fall Semester (October 25th) 2012
- Workshop for the NASCE Meeting at the University of Michigan, Ann Arbor, MI July 13 2011
- Workshop for CME at the University of New Hampshire, Durham, NH March 11 2011
- Seminar at the University of New Hampshire, Durham, NH Feb 1st 2011
- Biochem642 Molecular Visualization 2010 Fall Sessions
- Biochem642 Molecular Visualization 2009 Fall Sessions
- Proteopedia Work Session for Chem 791A-Biomolecular Structure
Personal Quicklinks
All Protected Pages
Files Uploaded
Sandboxes
- Sandbox1rpu working out configuration&isosurfaces&dots problems
- Sandbox2hvy test for dots in another file
- Sandbox CsrA
- Sandbox TestMultiSurface
Protected Sandbox Pages
Protected Topic Pages
- User:Wayne_Decatur/Haloarcula Large Ribosomal Subunit
- User:Wayne_Decatur/Haloarcula Large Ribosomal Subunit With Azithromycin
- User:Wayne Decatur/Interactions between Antibiotics and the Ribosome
- User:Wayne Decatur/Suppression of RNA Silencing by Viruses
- User:Wayne Decatur/Plant Viral Protein p19 Suppression of RNA Silencing
- User:Wayne Decatur/Tomato aspermy virus protein 2b Suppression of RNA Silencing
- User:Wayne Decatur/Flock house virus B2 protein Suppression of RNA Silencing
- User:Wayne Decatur/kink-turn motif
- User:Wayne Decatur/Teaching Proteopedia
- User:Wayne Decatur/Editing Getting Unremediated PDB Files
- User:Wayne Decatur/Moving Components or Parts of Structures
- User:Wayne Decatur/Generate Unfolded Structures
- User:Wayne Decatur/Alter Disulfide Bonds in a Structure
- User:Wayne Decatur/4ay9 pymol
- User:Wayne Decatur/Gal 4
- User:Wayne Decatur/Homology Modeling
- User:Wayne Decatur/Sequence analysis tools
- User:Wayne Decatur/Structure analysis tools
- User:Wayne Decatur/Molecular modeling tools
- User:Wayne Decatur/BioWikis
- User:Wayne Decatur/Code for Molecular Structure and Visualization Work
- User:Wayne Decatur/I-Ppo Morph Methods
- User:Wayne Decatur/3kg2 Morph Methods
- User:Wayne Decatur/3fpn Morph methods
- User:Wayne Decatur/3ewsSLASH3g0h Morph methods
- User:Wayne Decatur/humanaGal3hg2toothers morph methods
- User:Wayne Decatur/1cts to 2cts (citrate synthase) morph methods
- User:Wayne Decatur/1ig8 to 3b8a (hexokinase) morph methods
- User:Wayne Decatur/Converting Exported Proteopedia Pages from Jmol to JSmol
Templates
Help
- Proteopedia:Problems
- Jmol Command Reference Manual for advanced scene authoring.
- Jmol Wiki
Useful Resources
Wikitext help
- URLS in external links has the codes for using characters that aren't A-Z a-z 0-9 ._\/~%-+&#?!=()@ in links
- Guide to Wikitext Markup Language (wiki code)
- How to edit illustrates use of nowiki and pre tags.
- Wikitext quick cheat sheet also has how to make link to categories, too
- Categories can be linked to with colon in front
- HTML in wikitext
- Allows cropping of images, in addition to annotating.
- WikiTable Markup Guide
- Editing Wikitext/Tables
- Images: linking to articles using wikitext
