User:Wayne Decatur/Structure analysis tools: Difference between revisions
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* click `launch binder` [https://github.com/fomightez/cl_demo-binder here] for a series of demonstrations of useful resources on command line for manipulating structure files. | * click `launch binder` [https://github.com/fomightez/cl_demo-binder here] for a series of demonstrations of useful resources on command line for manipulating structure files. | ||
* [https://github.com/fomightez/structurework/tree/master/pdbsum_utilities PDBsum-utilities] - where I share my code to analyze PDBsum-derived data using Python. | * [https://github.com/fomightez/structurework/tree/master/pdbsum_utilities PDBsum-utilities] - where I share my code to analyze PDBsum-derived data using Python. | ||
* [https://github.com/fomightez/pdbsum-binder pdbsum-binder] - working with data from PDBsum integrated with Jupyter/Python | |||
* [https://github.com/fomightez/jupyter-jsmol-binder jupyter-jsmol-binder] - JMol Jsmol applets in Jupyter notebook | |||
* [https://github.com/fomightez/Jupyter-desktop_with_pymol Jupyter-desktop_with_pymol] - PyMOL graphical user interface served via MyBinder.org | |||
* [https://github.com/fomightez/pymol-binder pymol-binder] - PyMOL running headless for command line/scripting and interaction with Python. | |||
* [https://github.com/fomightez/modelit-binder modelit-binder] - Model.it software to produce a 3D model of DNA in bent confirmation combined with Jupyter ecosystem and PyMOL served via MyBinder.org | |||
* [https://github.com/fomightez/AnimatePymolWithJmol AnimatePymolWithJmol] - Easily animate PyMOL session scenes with Jmol to create an animated GIFs | |||
===R-based utilities=== | ===R-based utilities=== | ||
