Jmol/Depth from surface: Difference between revisions
From Proteopedia
Jump to navigationJump to search
Eric Martz (talk | contribs) No edit summary |
Eric Martz (talk | contribs) No edit summary |
||
| Line 10: | Line 10: | ||
color surfacedistance</pre> | color surfacedistance</pre> | ||
In Proteopedia's [[SAT|Molecular Scene Authoring Tools]] (SAT), you can enter these commands in the slot below the molecule. There will be a delay (about 20 sec on my computer) while JSmol calculates the surfacedistance for each atom. However, once the scene is saved as a green link, the colors are saved and displayed without re-calculation when the green link is clicked. | In Proteopedia's [[SAT|Molecular Scene Authoring Tools]] (SAT), you can enter these commands in the slot below the molecule. There will be a delay (about 20 sec on my computer) while JSmol calculates the surfacedistance for each atom. However, once the scene is saved as a green link, the colors are saved and displayed without re-calculation when the green link is clicked. | ||
===Color Schemes=== | |||
The default color scheme<ref>For the list of Jmol's color schemes, look for "set property colorscheme" under [https://chemapps.stolaf.edu/jmol/docs/#setmisc set (misc) in the command documentation].</ref> for surfacedistance is red-white-blue, "rwb" in Jmol command language. You can apply other color schemes, such as the spectral color scheme red-orange-yellow-green-blue ("roygb"). | The default color scheme<ref>For the list of Jmol's color schemes, look for "set property colorscheme" under [https://chemapps.stolaf.edu/jmol/docs/#setmisc set (misc) in the command documentation].</ref> for surfacedistance is red-white-blue, "rwb" in Jmol command language. You can apply other color schemes, such as the spectral color scheme red-orange-yellow-green-blue ("roygb"). | ||
