AlphaFold2 examples from CASP 14: Difference between revisions
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|+ ORF8 Alignments With Chain A of [[7jx6]] | |+ ORF8 Alignments With Chain A of [[7jx6]] | ||
|- | |- | ||
! Model || GDT_TS || Cα [https://en.wikipedia.org/wiki/Root-mean-square_deviation_of_atomic_positions RMSD], Å || Cα Aligned || [https://en.wikipedia.org/wiki/Root-mean-square_deviation_of_atomic_positions RMSD] Including<br>Sidechains, Å || Atoms Aligned | ! Model || GDT_TS || Disulfde Bonds || Cα [https://en.wikipedia.org/wiki/Root-mean-square_deviation_of_atomic_positions RMSD], Å || Cα Aligned || [https://en.wikipedia.org/wiki/Root-mean-square_deviation_of_atomic_positions RMSD] Including<br>Sidechains, Å || Atoms Aligned | ||
|- | |- | ||
| [[7jtl]]:A || || 4.02<br>'''0.66''' || 102/102 (100%)<br>'''87/102 (85%)''' || 4.3<br>'''1.58''' || 829/829 (100%)<br>'''709/829 (86%)''' | | [[7jtl]]:A || || 3 || 4.02<br>'''0.66''' || 102/102 (100%)<br>'''87/102 (85%)''' || 4.3<br>'''1.58''' || 829/829 (100%)<br>'''709/829 (86%)''' | ||
|- | |- | ||
| AlphaFold2 || 87 || 2.58<br>'''1.25''' || 92/92 (100%)<br>'''83/92* (90%)''' || 3.23<br>'''1.91''' || 747/748 (100%)<br>'''679/748 (91%)''' | | AlphaFold2 || 87 || 3 || 2.58<br>'''1.25''' || 92/92 (100%)<br>'''83/92* (90%)''' || 3.23<br>'''1.91''' || 747/748 (100%)<br>'''679/748 (91%)''' | ||
|- | |- | ||
| 2nd Best* || 43 || 5.33<br>'''1.71''' || 92/92 (100%)<br>'''38/92 (41%)''' || 6.54<br>'''5.86''' || 747/748 (100%)<br>'''324/748 (43%)''' | | 2nd Best* || 43 || 0 || 5.33<br>'''1.71''' || 92/92 (100%)<br>'''38/92 (41%)''' || 6.54<br>'''5.86''' || 747/748 (100%)<br>'''324/748 (43%)''' | ||
|- | |- | ||
| 3rd Best§ || 33 || 13.37<br>† || 92/92 (100%)<br>† || 14.50<br>† || 747/748 (100%)<br>† | | 3rd Best§ || 33 || 0 || 13.37<br>† || 92/92 (100%)<br>† || 14.50<br>† || 747/748 (100%)<br>† | ||
|} | |} | ||
:Alignments by "Magic Fit" of Swiss-PdbViewer 4.1.<br> | :Alignments by "Magic Fit" of Swiss-PdbViewer 4.1.<br> | ||
