User:Karsten Theis/Animation course

spinqualitylabelsall models Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Animate a scene with Jmol Load the scene and choose a look Open and try different representations and colors. 1. Choose a background: 2. How, if it all, do you want to show the protein? 3. How do you want the opioid to look like? 4. Other choices: Save some orientations Using your skills from the viewing guide, explore the scene (zoom, rotate, drag, label, measure etc). Every time you find an orientation (rotation, translation, zoom), click a different one of these links. You can restore the orientation by clicking on the link in the next section. Transition between orientations Go to different views: Animate between the four views: Select a transition speed: The following animation brings you to view 1, then 2, 3, and 4 Show the underlying commands Dock a ligand Click and drag on the ligand to move it. Alt-click and drag on the ligand to rotate it. Click and drag away from the ligand to adjust the view. To store each consecutive ligand position, consecutively click on the links below: Recall ligand position Clicking on the links below will restore the ligand position (scene0 is the original position in the binding pocket): To animate, click below Show the saved states in a console: To get to state 1, the command "ROTATE COMPARE {BF0} @{temp1} -2" is used, etc. Two competing ligands Recall ligand position Clicking on the links below will restore the agonist and antagonist positions: Show the saved states in a console: Collection of molecules () Morph a helix Here is the SARS-2 spike protein. Click and drag on the ligand to move it. Alt-click and drag on the ligand to rotate it. Click and drag away from the ligand to adjust the view. To store each consecutive ligand position, consecutively click on the links below: Recall ligand position Clicking on the links below will restore the ligand position (scene0 is the original position in the binding pocket): To animate, click below Show the saved states in a console: To get to state 1, the command "ROTATE COMPARE {912-985} @{temp1} -2" is used, etc.

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Karsten Theis