AlphaFold2 examples from CASP 14: Difference between revisions
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However, several of the Dali hits superposed with non-overlapping core fragments of [[6vr4]]: | However, several of the Dali hits superposed with non-overlapping core fragments of [[6vr4]]: | ||
*[[2j7n]] chain A, RNA-dependent RNA polymerase | *[[2j7n]] chain A, RNA-dependent RNA polymerase | ||
**length 934, aligned residues '''115, RMSD 4.3 Å''', structural alignment 9 %id. | **length 934, aligned residues '''115, RMSD 4.3 Å''', Z=4.0, structural alignment 9 %id. | ||
*[[4ncj]] chain A, DNA double-strand break repair RAD50 ATPase | *[[4ncj]] chain A, DNA double-strand break repair RAD50 ATPase | ||
**length 311, aligned residues '''109, RMSD 4.7 Å''', structural alignment 11 %id. | **length 311, aligned residues '''109, RMSD 4.7 Å''', Z=3.4, structural alignment 11 %id. | ||
*[[5vfk]] chain A, Uncharacterized protein | *[[5vfk]] chain A, Uncharacterized protein | ||
**length 146, aligned residues '''61, RMSD 7.8 Å''', structural alignment 11 %id. | **length 146, aligned residues '''61, RMSD 7.8 Å''', Z=3.3, structural alignment 11 %id. | ||
The [https://fatcat.godziklab.org/ FATCAT Server] reported that in order to superpose 150 residues (37% of 404) of T1037 with the closest structure in the PDB, 3 twists at hinges were required, after which an RMSD of 3.1 Å was achieved. For a 200-residue superposition (50% of 404), the best results after 3 twists had an RMSD of 5.4 Å. | The [https://fatcat.godziklab.org/ FATCAT Server] reported that in order to superpose 150 residues (37% of 404) of T1037 with the closest structure in the PDB, 3 twists at hinges were required, after which an RMSD of 3.1 Å was achieved. For a 200-residue superposition (50% of 404), the best results after 3 twists had an RMSD of 5.4 Å. | ||
