Structure superposition tools: Difference between revisions
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*Download site: [http://www.expasy.org/spdbv/ DeepView Swiss-PdbViewer]. | *Download site: [http://www.expasy.org/spdbv/ DeepView Swiss-PdbViewer]. | ||
*Publications (1997, 1999)<ref>PMID: 9504803</ref><ref>PMID: 10470037</ref> | *Publications (1997, 1999)<ref>PMID: 9504803</ref><ref>PMID: 10470037</ref> | ||
*Version 4. | *Version 4.11 released in 2019; works on Windows and macOS 10.5-10.14. | ||
*'''Caution''': This program | *'''Caution''': This program may report the wrong number of alpha carbons superposed, typically reporting twice or four-times the actual number. In order to get the correct count, use the Fit menu, Calculate RMS, or observe the number of residues selected in each layer. | ||
*Help: YES. | *Help: YES. | ||
* Fit, Magic Fit does a '''sequence-based''' structural | * Fit, Magic Fit does a '''sequence-based''' structural superposition. | ||
* Fit, Iterative Magic Fit starts with a sequence-based structural | * Fit, Iterative Magic Fit starts with a sequence-based structural superposition, then does further structural superposition over a smaller number of residues, further minimizing the RMSD. | ||
* Fit, Explore Domain Alternate Fits: does a '''sequence-independent''' structural | * Fit, Explore Domain Alternate Fits: does a '''sequence-independent''' structural superposition. | ||
* Magic Fit and Iterative Magic Fit can '''align multiple chains in each model''' and can '''align DNA chains''' as well as protein chains. | * Magic Fit and Iterative Magic Fit can '''align multiple chains in each model''' and can '''align DNA chains''' as well as protein chains. | ||
* Color, RMS: colors the target structure by deviation. | * Color, RMS: colors the target structure by deviation. | ||
