How to predict structures with AlphaFold: Difference between revisions
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6. Open the Runtime menu at the very top of the page, and select '''Run all'''. | 6. Open the Runtime menu at the very top of the page, and select '''Run all'''. | ||
==Results== | |||
Static images of backbone renderings of predicted models will appear at the bottom of the section ''run alphafold'' as they are completed. | |||
You may be interested to note the number of recycles required for each model to converge to the specified tolerance. These numbers are not captured in the downloaded zip file. | |||
The models will be ranked with number one having the highest estimated reliability (pLDDT). This is usually not in the order in which they were calculated. You might want to copy the ranking list, perhaps adding the number of recycles and final tolerance values: | |||
<pre> | |||
model rank based on pLDDT {{Font color|green|Recycles Tolerance}} | |||
rank_1_model_2_ptm_seed_0 pLDDT:62.46 10 0.33 | |||
rank_2_model_3_ptm_seed_0 pLDDT:59.59 9 0.47 | |||
rank_3_model_1_ptm_seed_0 pLDDT:55.63 12 0.52 | |||
</pre> | |||
==Downloading Results== | ==Downloading Results== | ||
