How to predict structures with AlphaFold: Difference between revisions

From Proteopedia
Jump to navigationJump to search
Eric Martz (talk | contribs)
Eric Martz (talk | contribs)
Line 31: Line 31:


Static images of backbone renderings of predicted models will appear at the bottom of the section ''run alphafold'' as they are completed.
Static images of backbone renderings of predicted models will appear at the bottom of the section ''run alphafold'' as they are completed.
Each predicted model has an average estimated reliability (pLDDT). >90 is likely accurate; <70 is low confidence. For more about interpreting these values, please see the [https://alphafold.ebi.ac.uk/faq AlphaFold Database FAQ].


You may be interested to note the number of recycles required for each model to converge to the specified tolerance. These numbers are not captured in the downloaded zip file.
You may be interested to note the number of recycles required for each model to converge to the specified tolerance. These numbers are not captured in the downloaded zip file.