How to predict structures with AlphaFold: Difference between revisions
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[[FirstGlance in Jmol]] version 3.7 (when released) will automatically color uploaded AlphaFold models by estimated reliability per residue. | [[FirstGlance in Jmol]] version 3.7 (when released) will automatically color uploaded AlphaFold models by estimated reliability per residue. | ||
Some models have high confidence in a folded [[domain]], and low confidence in a segment that is not part of a compact domain. Low-confidence segments may be [[intrinsically disordered]]. It is useful to compare [[Intrinsically_Disordered_Protein#Protein_disorder_predictors|predictions of disorder]] with AlphaFold reliability estimates. | Some models have high confidence in a folded [[domain]], and low confidence in a segment that is not part of a compact domain. Low-confidence segments may be [[Intrinsically_Disordered_Protein|intrinsically disordered]]. It is useful to compare [[Intrinsically_Disordered_Protein#Protein_disorder_predictors|predictions of disorder]] with AlphaFold reliability estimates. | ||
You may be interested to note the number of recycles required for each model to converge to the specified tolerance. These numbers are not captured in the downloaded zip file. | You may be interested to note the number of recycles required for each model to converge to the specified tolerance. These numbers are not captured in the downloaded zip file. | ||
