How to predict structures with AlphaFold: Difference between revisions

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Eric Martz (talk | contribs)
Eric Martz (talk | contribs)
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6. Open the Runtime menu at the very top of the page, and select '''Run all'''.
6. Open the Runtime menu at the very top of the page, and select '''Run all'''.
==Downloading Results==
{{Font color|red|Do NOT close your AlphaFold2_advanced browser tab until the job is completed.}} It appears that you will lose your job if you close the browser tab. You will be warned if you inadvertently try.
When the job is completed, a dialog to download a zip file will appear automatically. (Sometimes you will be asked for permission to enable download first.)


==Interpreting Results==
==Interpreting Results==
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Also notice that, in this case, all 3 models have low confidence (pLDDT < 70), and are of questionable value.
Also notice that, in this case, all 3 models have low confidence (pLDDT < 70), and are of questionable value.


==Downloading Results==
==Paying for Colab Pro==
 
{{Font color|red|Do NOT close your AlphaFold2_advanced browser tab until the job is completed.}} It appears that you will lose your job if you close the browser tab. You will be warned if you inadvertently try.
 
When the job is completed, a dialog to download a zip file will appear automatically. (Sometimes you will be asked for permission to enable download first.)


==Paid Membership==
When I submitted a new job, after completing several large jobs (>500 residues), I was informed that a GPU could not be assigned. My access was temporarily restricted because of the resources I had recently consumed.


Colab Pro
In October, 2021, a subscription to [https://colab.research.google.com/signup/pricing Colab Pro] was US $10/month. After I subscribed, all jobs I have submitted have been processed without complaint.


==References and Notes==
==References and Notes==
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