Clashes: Difference between revisions

Line 11:

* [[6zx4]], an X-ray model of resolution 0.96 Å, contains 5,850 atoms including hydrogens. 6 clashes were present with atomic overlaps in the range 0.41-0.49 Å. The clashscore is thus 6/5.8 = 1.0. This placed it in about the 90th percentile (90% of the compared models have more clashes) of 1,321 models with resolutions of 0.86-1.06 Å. [https://files.rcsb.org/pub/pdb/validation_reports/zx/6zx4/6zx4_full_validation.pdf Full Validation Report].

* [[6ef8]], a cryo-EM model of resolution 3.7 Å, contains 22,911 non-hydrogen atoms. MolProbity added 20,895 hydrogens for a total of 43,806 atoms. 558 clashes were present with atomic overlaps in the range 0.4 to 1.47 Å. The clashscore is thus 558/43.8 = 13. This placed it in about the 35th percentile (35% of the compared models have more clashes) among the clashscores for all cryo-EM models.

* [[6ef8]], a cryo-EM model of resolution 3.7 Å, contains 22,911 non-hydrogen atoms. MolProbity added 20,895 hydrogens for a total of 43,806 atoms. 558 clashes were present with atomic overlaps in the range 0.4 to 1.47 Å. The clashscore is thus 558/43.8 = 13. This placed it in about the 35th percentile (35% of the compared models have more clashes) among the clashscores for all cryo-EM models. [https://files.rcsb.org/pub/pdb/validation_reports/ef/6ef8/6ef8_full_validation.pdf Full Validation Report].

==Visualization of Clashes==

Navigation menu

Page actions

Page actions

Personal tools

Navigation

Search

Tools

@@ Line 11: / Line 11: @@
 * [[6zx4]], an X-ray model of resolution 0.96 Å, contains 5,850 atoms including hydrogens. 6 clashes were present with atomic overlaps in the range 0.41-0.49 Å. The clashscore is thus 6/5.8 = 1.0. This placed it in about the 90th percentile (90% of the compared models have more clashes) of 1,321 models with resolutions of 0.86-1.06 Å. [https://files.rcsb.org/pub/pdb/validation_reports/zx/6zx4/6zx4_full_validation.pdf Full Validation Report].
-* [[6ef8]], a cryo-EM model of resolution 3.7 Å, contains 22,911 non-hydrogen atoms. MolProbity added 20,895 hydrogens for a total of 43,806 atoms. 558 clashes were present with atomic overlaps in the range 0.4 to 1.47 Å. The clashscore is thus 558/43.8 = 13. This placed it in about the 35th percentile (35% of the compared models have more clashes) among the clashscores for all cryo-EM models.
+* [[6ef8]], a cryo-EM model of resolution 3.7 Å, contains 22,911 non-hydrogen atoms. MolProbity added 20,895 hydrogens for a total of 43,806 atoms. 558 clashes were present with atomic overlaps in the range 0.4 to 1.47 Å. The clashscore is thus 558/43.8 = 13. This placed it in about the 35th percentile (35% of the compared models have more clashes) among the clashscores for all cryo-EM models. [https://files.rcsb.org/pub/pdb/validation_reports/ef/6ef8/6ef8_full_validation.pdf Full Validation Report].
 ==Visualization of Clashes==