3a01: Difference between revisions

Revision as of 16:13, 22 December 2021

Crystal structure of Aristaless and Clawless homeodomains bound to DNA

Structural highlights

3a01 is a 8 chain structure with sequence from Drome. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Related:	3a02, 3a03
Gene:	C15, CG7937 (DROME), al, CG3935 (DROME)
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[AL_DROME] Involved in the morphogenesis of proximal and distal pattern elements in a subset of appendages. Also has a role in early imaginal disk development.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

To achieve accurate gene regulation, some homeodomain proteins bind cooperatively to DNA to increase those site specificities. We report a ternary complex structure containing two homeodomain proteins, aristaless (Al) and clawless (Cll), bound to DNA. Our results show that the extended conserved sequences of the Cll homeodomain are indispensable to cooperative DNA binding. In the Al-Cll-DNA complex structure, the residues in the extended regions are used not only for the intermolecular contacts between the two homeodomain proteins but also for the sequence-recognition mechanism of DNA by direct interactions. The residues in the extended N-terminal arm lie within the minor groove of DNA to form direct interactions with bases, whereas the extended conserved region of the C-terminus of the homeodomain interacts with Al to stabilize and localize the third alpha helix of the Cll homeodomain. This structure suggests a novel mode for the cooperativity of homeodomain proteins.

Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless.,Miyazono K, Zhi Y, Takamura Y, Nagata K, Saigo K, Kojima T, Tanokura M EMBO J. 2010 May 5;29(9):1613-23. Epub 2010 Apr 13. PMID:20389279^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Miyazono K, Zhi Y, Takamura Y, Nagata K, Saigo K, Kojima T, Tanokura M. Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless. EMBO J. 2010 May 5;29(9):1613-23. Epub 2010 Apr 13. PMID:20389279 doi:10.1038/emboj.2010.53

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OCA

[1] Miyazono K, Zhi Y, Takamura Y, Nagata K, Saigo K, Kojima T, Tanokura M. Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless. EMBO J. 2010 May 5;29(9):1613-23. Epub 2010 Apr 13. PMID:20389279 doi:10.1038/emboj.2010.53

[1]

@@ Line 1: / Line 1: @@
 ==Crystal structure of Aristaless and Clawless homeodomains bound to DNA==
-<StructureSection load='3a01' size='340' side='right' caption='[[3a01]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
+<StructureSection load='3a01' size='340' side='right'caption='[[3a01]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3a01]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Drome Drome]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A01 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A01 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3a01]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Drome Drome]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A01 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A01 FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3a02|3a02]], [[3a03|3a03]]</td></tr>
+</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3a02|3a02]], [[3a03|3a03]]</div></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">C15, CG7937 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7227 DROME]), al, CG3935 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7227 DROME])</td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">C15, CG7937 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7227 DROME]), al, CG3935 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7227 DROME])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a01 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a01 OCA], [http://pdbe.org/3a01 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a01 RCSB], [http://www.ebi.ac.uk/pdbsum/3a01 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a01 ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a01 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a01 OCA], [https://pdbe.org/3a01 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a01 RCSB], [https://www.ebi.ac.uk/pdbsum/3a01 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a01 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/AL_DROME AL_DROME]] Involved in the morphogenesis of proximal and distal pattern elements in a subset of appendages. Also has a role in early imaginal disk development.
+[[https://www.uniprot.org/uniprot/AL_DROME AL_DROME]] Involved in the morphogenesis of proximal and distal pattern elements in a subset of appendages. Also has a role in early imaginal disk development.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 34: / Line 34: @@
 </StructureSection>
 [[Category: Drome]]
+[[Category: Large Structures]]
 [[Category: Kojima, T]]
 [[Category: Miyazono, K]]

3a01: Difference between revisions

Revision as of 16:13, 22 December 2021

Crystal structure of Aristaless and Clawless homeodomains bound to DNA

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

References

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