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spinqualitylabelsall models T-Box transcription factor 21 (TBX21) Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Introduction TBX21 (for t-box transcription factor 21) or T-bet is a transcription factor, more precisely a T-box proteins. These transcription factors are known to be specialised in the regulation of developmental processes, especially with immune cells. The DNA binding domain of T-bet has a dimer structure composed of two identical chains (A / B ) with a total molecular weight of 76,37 kDA. This binding domain allows the protein to bind itself on the DNA promotor or regulator area. T-box protein is able to link two DNA molecules with only one dimer. Moreover, it is able to link two areas of the same DNA molecules which are far from each other and thus create a chromatin loop. The main function of this transcription factor is to direct TH1 cells differentiation from naive CD4+ cells. T-bet is cooperating with Stat4 (signal transducer and activator of transcription 4) for Th1 gene expression . Nevertheless, the action field of T-bet is larger than classical T-box protein. Location TBX21 protein is coded by the TBX21 gene on the chromosome 17 in humans. More precisely on the band 17q21.32. Structure and structural interactions Primary Structure The DNA binding domain of T-bet from Mus musculus for a monomer is located between the residues LYS 135 and ASN 326 Figure of primary structure of T-bet protein from Mus musculus Secondary structure and interactions The secondary structure of the protein allows it to bind with the DNA : the T-box domain consists of several repeats of β-strands and α-helix and is involved in both dimerization and DNA binding. Thanks to some post-translational modifications of the protein’s residues, the transcription factor TBX21 can bind with DNA between the residues LYS 135 and ASN 326 and some proteins. Firstly, the ubiquitination of the residue K 313 allows TBX21 to bind with the DNA sequence. Lys-313 was lately found as a key site required for T-bet to interact with the IFN-γ gene promoter and to assure phosphorylation at Thr-302 . Secondly, the phosphorylation of some residues allows TBX21 to interact with several proteins. For example, phosphorylation of T 302 allows TBX21 to interact with NFAT, the one of Y 304 with RUNX1, that of S 508 with NF-кB p65 and finally the one of Y525 allows the interaction with GATA-3 Biological roles of TBX21 Regulation of Th cells differentiation by TBX21 The transcription factor T-bet directs Th1 cell differentiation. The molecular mechanisms that underlie this lineage-specific gene regulation are not completely understood but several hypotheses have already been made on the action's mechanism of T-bet. We know that T-bet initiates Th1 lineage development from naive Thp cells by activating Th1 genetics and repressing the opposing Th2 programs. Th1 cells stimulate cellular immune response while Th2 stimulates humoral immune response and induces antibody production. T-bet action in the formation of SEC Here, we show that T-bet acts through enhancers to allow the recruitment of Mediator and P-TEFb in the formation of the super elongation complex (SEC). Th1 genes are occupied by RNA Polymerase II in Thp cells, while T-bet-mediated recruitment of P-TEFb and mediator. The recruitment of P-TEFb and mediator activates transcriptional elongation and giving place to increased differentiation of Thp into Th1. T-bet can also regulate Th1 cell differentiation by directly initiating gamma interferon (IFN-γ) transcription and by suppressing Th2-specific transcription factor GATA-3. The T-bet induced expression of IFN-γ derives Th precursor cells to differentiate into Th1 effector cells. This stimulation of IFN-γ can take place thanks to the action of a nuclear tyrosine kinase, c-Abl. C-Abl induces phosphorylation of T-bet at tyrosine residues TYR 219, TYR 265, and TYR 304. C-Abl phosphorylates the tyrosine residues within the T-box domain, which is the DNA-binding domain of T-bet. This phosphorylation leads to conformational changes of the T-box domain to facilitate the DNA-binding activity of T-bet and appears to play a crucial role in the IFN-γ promoter-binding activity of T-bet. Recently, many studies have reported that T-bet also modulates other Th cell lineages, including Th17, Treg, and follicular Th (TFH) cells, in coordination with many transcription factors, such as the retinoic acid-related orphan receptor-𝛾t (ROR𝛾t) , runt-related transcription factor 3 (RUNX3), and B-cell lymphoma-6 (BCL6). These findings suggest that T-bet is a transcription factor that is critical for fine-tuning Th cell development. TBX21 as an antiasthmatic regulator Asthma remains one of the commonest chronic inflammatory diseases and has a major impact on the life of sufferers. It is associated with allergy mediated by IgE antibodies. T-bet was found associated with many immune-mediated diseases such as asthma. Th1, Th2 and Th17 cells are the main cells involved in the pathophysiology of asthma . In asthmatic airways, Th2 cells are activated and release several cytokines that regulate IgE production and inflammatory cell recruitment, such as eosinophils. Th2 cells and GATA-3 play an important role in allergic inflammation and asthma, and induce IgE production. The asthmatic patients present high levels of total IgE. On the contrary, the T-bet gene expression and Th1 pattern, along with the IFN- γ production, are usually associated with non-allergic asthmatics and healthy subjects. Also, some research have found that airway reactivity is moderated by the use of corticosteroids in asthma patients and with the use of it the TBX21 variant increases Th1 and decreases Th2 cytokine expression. So TBX21 may be determinant in the therapy of asthma with inhaled corticosteroids. In T-bet structure, ubiquitination takes place at LYS 313. It has an impact on the stability of the protein and leads to the degradation of the protein by the proteosome. Some research found the role of deubiquitinases involved in T-bet stability and function. As a deubiquitinase, USP10 belongs to the ubiquitin-specificprotease family of cysteine proteases. Cysteine 424 site on USP10 is crucial for its hydrolase activity. Results have shown that USP10 could interact with T-bet and stabilize it via interaction between Lysine 313 of T-bet and Cysteine 424 of USP10. Deubiquitination inhibits its degradation by the proteosome and enhance the secretion of IFN- γ. Researchers believe that the USP10-dependent T-bet deubiquitination and stabilization can regulate antigen induced immune disorder especially in Th1 specific inflammation. Thus, appropriate decreasing USP10 level may contribute to the T-bet degradation and inflammation attenuation. Over the past few years, it has been shown by researchers that the polymorphism of TBX21 could act on nasal polyps and aspirin intolerance too.