3efp: Difference between revisions

Revision as of 11:48, 16 February 2022

Crystal structure of the Escherichia coli twin arginine leader peptide binding protein DmsD in a monomeric form

Structural highlights

3efp is a 2 chain structure with sequence from Ecoli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:	CL, GOL, NA, TRS
Gene:	dmsD, ynfI, b1591, JW5262 (ECOLI)
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[DMSD_ECOLI] Required for biogenesis/assembly of DMSO reductase, but not for the interaction of the DmsA signal peptide with the Tat system. May be part of a chaperone cascade complex that facilitates a folding-maturation pathway for the substrate protein.^[1] ^[2] ^[3] ^[4]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The redox enzyme maturation proteins play an essential role in the proofreading and membrane targeting of protein substrates to the twin-arginine translocase. Functionally, the most thoroughly characterized redox enzyme maturation protein to date is Escherichia coli DmsD (EcDmsD). Herein, we present the X-ray crystal structure of the monomeric form of the EcDmsD refined to 2.0 A resolution, with clear electron density present for each of its 204 amino acid residues. The structural data presented here complement the biochemical data previously generated regarding the function of these twin-arginine translocase leader peptide binding chaperone proteins. Docking and molecular dynamics simulation experiments were used to provide a proposed model for how this chaperone is able to recognize the leader peptide of its substrate DmsA. The interactions observed in the model are in agreement with previous biochemical data and suggest intimate interactions between the conserved twin-arginine motif of the leader peptide of E. coli DmsA and the most conserved regions on the surface of EcDmsD.

Structural analysis of a monomeric form of the twin-arginine leader peptide binding chaperone Escherichia coli DmsD.,Stevens CM, Winstone TM, Turner RJ, Paetzel M J Mol Biol. 2009 May 29;389(1):124-33. Epub 2009 Apr 8. PMID:19361518^[5]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Oresnik IJ, Ladner CL, Turner RJ. Identification of a twin-arginine leader-binding protein. Mol Microbiol. 2001 Apr;40(2):323-31. PMID:11309116
↑ Ray N, Oates J, Turner RJ, Robinson C. DmsD is required for the biogenesis of DMSO reductase in Escherichia coli but not for the interaction of the DmsA signal peptide with the Tat apparatus. FEBS Lett. 2003 Jan 16;534(1-3):156-60. PMID:12527378
↑ Papish AL, Ladner CL, Turner RJ. The twin-arginine leader-binding protein, DmsD, interacts with the TatB and TatC subunits of the Escherichia coli twin-arginine translocase. J Biol Chem. 2003 Aug 29;278(35):32501-6. Epub 2003 Jun 17. PMID:12813051 doi:https://dx.doi.org/10.1074/jbc.M301076200
↑ Li H, Chang L, Howell JM, Turner RJ. DmsD, a Tat system specific chaperone, interacts with other general chaperones and proteins involved in the molybdenum cofactor biosynthesis. Biochim Biophys Acta. 2010 Jun;1804(6):1301-9. doi: 10.1016/j.bbapap.2010.01.022., Epub 2010 Feb 11. PMID:20153451 doi:https://dx.doi.org/10.1016/j.bbapap.2010.01.022
↑ Stevens CM, Winstone TM, Turner RJ, Paetzel M. Structural analysis of a monomeric form of the twin-arginine leader peptide binding chaperone Escherichia coli DmsD. J Mol Biol. 2009 May 29;389(1):124-33. Epub 2009 Apr 8. PMID:19361518 doi:10.1016/j.jmb.2009.03.069

Proteopedia Page Contributors and Editors (what is this?)

OCA

[1] Oresnik IJ, Ladner CL, Turner RJ. Identification of a twin-arginine leader-binding protein. Mol Microbiol. 2001 Apr;40(2):323-31. PMID:11309116

[2] Ray N, Oates J, Turner RJ, Robinson C. DmsD is required for the biogenesis of DMSO reductase in Escherichia coli but not for the interaction of the DmsA signal peptide with the Tat apparatus. FEBS Lett. 2003 Jan 16;534(1-3):156-60. PMID:12527378

[3] Papish AL, Ladner CL, Turner RJ. The twin-arginine leader-binding protein, DmsD, interacts with the TatB and TatC subunits of the Escherichia coli twin-arginine translocase. J Biol Chem. 2003 Aug 29;278(35):32501-6. Epub 2003 Jun 17. PMID:12813051 doi:https://dx.doi.org/10.1074/jbc.M301076200

[4] Li H, Chang L, Howell JM, Turner RJ. DmsD, a Tat system specific chaperone, interacts with other general chaperones and proteins involved in the molybdenum cofactor biosynthesis. Biochim Biophys Acta. 2010 Jun;1804(6):1301-9. doi: 10.1016/j.bbapap.2010.01.022., Epub 2010 Feb 11. PMID:20153451 doi:https://dx.doi.org/10.1016/j.bbapap.2010.01.022

[5] Stevens CM, Winstone TM, Turner RJ, Paetzel M. Structural analysis of a monomeric form of the twin-arginine leader peptide binding chaperone Escherichia coli DmsD. J Mol Biol. 2009 May 29;389(1):124-33. Epub 2009 Apr 8. PMID:19361518 doi:10.1016/j.jmb.2009.03.069

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[2]

[3]

[4]

[5]

@@ Line 1: / Line 1: @@
 ==Crystal structure of the Escherichia coli twin arginine leader peptide binding protein DmsD in a monomeric form==
-<StructureSection load='3efp' size='340' side='right' caption='[[3efp]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
+<StructureSection load='3efp' size='340' side='right'caption='[[3efp]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3efp]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EFP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EFP FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3efp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EFP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EFP FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dmsD, ynfI, b1591, JW5262 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dmsD, ynfI, b1591, JW5262 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3efp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3efp OCA], [http://pdbe.org/3efp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3efp RCSB], [http://www.ebi.ac.uk/pdbsum/3efp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3efp ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3efp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3efp OCA], [https://pdbe.org/3efp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3efp RCSB], [https://www.ebi.ac.uk/pdbsum/3efp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3efp ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/DMSD_ECOLI DMSD_ECOLI]] Required for biogenesis/assembly of DMSO reductase, but not for the interaction of the DmsA signal peptide with the Tat system. May be part of a chaperone cascade complex that facilitates a folding-maturation pathway for the substrate protein.<ref>PMID:11309116</ref> <ref>PMID:12527378</ref> <ref>PMID:12813051</ref> <ref>PMID:20153451</ref>
+[[https://www.uniprot.org/uniprot/DMSD_ECOLI DMSD_ECOLI]] Required for biogenesis/assembly of DMSO reductase, but not for the interaction of the DmsA signal peptide with the Tat system. May be part of a chaperone cascade complex that facilitates a folding-maturation pathway for the substrate protein.<ref>PMID:11309116</ref> <ref>PMID:12527378</ref> <ref>PMID:12813051</ref> <ref>PMID:20153451</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 34: / Line 34: @@
 </StructureSection>
 [[Category: Ecoli]]
+[[Category: Large Structures]]
 [[Category: Paetzel, M]]
 [[Category: Stevens, C M]]

3efp: Difference between revisions

Revision as of 11:48, 16 February 2022

Crystal structure of the Escherichia coli twin arginine leader peptide binding protein DmsD in a monomeric form

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

References

Contents

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