3fwx: Difference between revisions
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==The crystal structure of the peptide deformylase from Vibrio cholerae O1 biovar El Tor str. N16961== | ==The crystal structure of the peptide deformylase from Vibrio cholerae O1 biovar El Tor str. N16961== | ||
<StructureSection load='3fwx' size='340' side='right' caption='[[3fwx]], [[Resolution|resolution]] 2.00Å' scene=''> | <StructureSection load='3fwx' size='340' side='right'caption='[[3fwx]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3fwx]] is a 2 chain structure with sequence from [ | <table><tr><td colspan='2'>[[3fwx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibc3 Vibc3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FWX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FWX FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">def-1, GI:15640078, VC0395_A2473 ([ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">def-1, GI:15640078, VC0395_A2473 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=345073 VIBC3])</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fwx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fwx OCA], [https://pdbe.org/3fwx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fwx RCSB], [https://www.ebi.ac.uk/pdbsum/3fwx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fwx ProSAT], [https://www.topsan.org/Proteins/CSGID/3fwx TOPSAN]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[[ | [[https://www.uniprot.org/uniprot/A5F4B3_VIBC3 A5F4B3_VIBC3]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | |||
[[Category: Vibc3]] | [[Category: Vibc3]] | ||
[[Category: Anderson, W]] | [[Category: Anderson, W]] | ||
Revision as of 08:13, 2 March 2022
The crystal structure of the peptide deformylase from Vibrio cholerae O1 biovar El Tor str. N16961
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