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| <ref name="Bergoug"> DOI:10.3390/cells9112365</ref><ref name="Kioro"> DOI:10.1038/labinvest.2016.142</ref><ref name="Sabatini"> DOI:10.1007/s11940-015-0355-4</ref> | | <ref name="Bergoug"> DOI:10.3390/cells9112365</ref><ref name="Kioro"> DOI:10.1038/labinvest.2016.142</ref><ref name="Sabatini"> DOI:10.1007/s11940-015-0355-4</ref> |
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| ==FINAL SCENES COPY AND PASTE==
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| Open/Closed Conformation Scenes
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| Closed-
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| <scene name='90/904311/Closed_confirmation_w_no_ras/3'>closed conformation</scene>
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| Domain Scenes-
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| <scene name='90/904311/Domainintro_open/11'>Open conformation monomomer(paste at top of domain section)</scene>
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| <scene name='90/904311/N-heatarm_open/2'>N-HEATARM(place in heat section)</scene>
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| <scene name='90/904311/C-heatarm_open/2'>C-HEATARM(in heat section)</scene>
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| <scene name='90/904311/Grd_open/2'>GRD Open(in GRD section)</scene>
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| <scene name='90/904311/Gapex_open/2'>GAPex Open(in gap section)</scene>
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| <scene name='90/904311/Sec14ph_open/2'>Sec14PH Open(in sec section)</scene>
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| Linkers Open/Closed-
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| Closed Linker-
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| <scene name='90/904311/Linker_closed/4'>Linkers in Closed Conformation</scene>
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| <jmol>
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| <jmolButton>
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| <script>moveto 1.0 { -93 -976 -198 100.01} 317.4 0.0 0.0 {364.4077734377054 341.9358671885079 392.3046403678749} 146.92471247967674 {0 0 0} 0 0 0 3.0 0.0 0.0 </script> <text>🔎Zoom In(Closed Linkers)</text>
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| </jmolButton>
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| </jmol>
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| Open Linker-
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| <scene name='90/904311/Linkers_open/2'>Linkers in the Open Conformation</scene>
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| <jmol>
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| <jmolButton>
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| <script>moveto 1.0 { 258 942 215 149.04} 254.03 0.0 0.0 {363.6198596926281 345.1996488441136 383.09000113650916} 143.7868028412415 {0 0 0} 0 0 0 3.0 0.0 0.0 </script> <text>🔎Zoom in</text>
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| </jmolButton>
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| </jmol>
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| Zinc Binding Site Fixed-
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| <scene name='90/904311/Zinc_binding_site/11'>Zinc Binding Site</scene>
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| RAS Bound in Open Fixed-
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| <scene name='90/904311/Arg_1276_open/13'>Arg 1276 w open zoomed out</scene>
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| <scene name='90/904311/Arg_1276_open/14'>Arg 1276 w open zoomed out but with no Arg labeled</scene>
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| <scene name='90/904311/Arg_1276_open/13'>Arg 1276 in open conformation</scene>
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| <jmol>
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| <jmolButton>
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| <script>moveto 1.0 { -776 433 -458 146.98} 7209.11 0.0 0.0 {361.5375833333334 402.0207083333333 360.750125} 190.41144084626742 {0 0 0} 0 0 0 3.0 0.0 0.0</script> <text>🔎</text>
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| </jmolButton>
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| </jmol>
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| Open Zoomed out Molecular Interactions:
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| <scene name='90/904311/Arg_1276_mi/2'>Molecular Interaction Open</scene>
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| <jmol>
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| <jmolButton>
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| <script>moveto 1.0 { 294 -950 -102 45.37} 2089.03 0.0 0.0 {360.8673666666667 403.1638666666667 362.0271666666667} 189.97419116715565 {0 0 0} 0 0 0 3.0 0.0 0.0</script> <text>🔎</text>
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| </jmolButton>
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| </jmol>
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| RAS Bound in Closed Fixed-
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| <scene name='90/904311/Closed_zoom/10'>Arg 1276 closed zoomed out</scene>
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| <scene name='90/904311/Closed_zoom/11'>Arg 1276 closed zoomed out no label</scene>
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| <scene name='90/904311/Closed_zoom/10'>Arg 1276 in the closed conformation</scene>
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| <jmol>
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| <jmolButton>
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| <script>moveto 1.0 { -816 -263 -515 73.84} 7673.3 0.0 0.0 {369.48317647058826 352.12982352941174 432.1719411764706} 186.8074765770222 {0 0 0} 0 0 0 3.0 0.0 0.0</script> <text>🔎</text>
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| </jmolButton>
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| </jmol>
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| Molecular Interactions closed R1276, E31, Y32:
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| <scene name='90/904311/Closed_arg/6'>Molecular Interactions R1276 Closed</scene>
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| <jmol>
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| <jmolButton>
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| <script>moveto 1.0 { 347 936 -57 112.47} 2508.34 0.0 0.0 {366.9273333333333 357.0333333333333 434.887} 189.81815871562094 {0 0 0} 0 0 0 3.0 0.0 0.0</script> <text>🔎</text>
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| </jmolButton>
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| </jmol>
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| Spred1-
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| <scene name='90/904311/Spred1_w_grd/2'>Spred 1 closed w GRD</scene>
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| <scene name='90/904311/Closed_conformation/8'>Text To Be Displayed</scene>
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| ==References placeholders==
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| This section will be removed it is just for copy and paste purposes. We will add the PDB code names as references in the captions of each scene.
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| <ref name="Bergoug"> DOI:10.3390/cells9112365</ref>
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| <ref name="Bourne"> DOI:10.1038/39470</ref>
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| <ref name="Kioro"> DOI:10.1038/labinvest.2016.142</ref>
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| <ref name="Lupton"> DOI:10.1038/s41594-021-00687-2</ref>
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| <ref name="Naschberger"> DOI:10.1038/s41586-021-04024-x</ref>
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| <ref name="Sabatini"> DOI:10.1007/s11940-015-0355-4</ref>
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| ==References== | | ==References== |
| <references/> | | <references/> |