BASIL2022GV3HDT: Difference between revisions
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== Docking== | == Docking== | ||
We used POCASA to determine potential binding pockets within our protein and PyRX to actually bind dCMP to 3HDT. Then PyMOL was used to visualize the binding pockets and dCMP in the protein. This <scene name='90/904996/Binding_pockets/1'>binding pocket</scene> | We used POCASA to determine potential binding pockets within our protein and PyRX to actually bind dCMP to 3HDT. Then PyMOL was used to visualize the binding pockets and dCMP in the protein. This <scene name='90/904996/Binding_pockets/1'>binding pocket</scene> (in purple) is a potential pocket the substrate dCMP may bind to in the protein, 3HDT. However, this area was where dCMP binded with the highest affinity in PyRx. The amino acids interacting with the substrate within that area are.... | ||
However, these results may not be as accurate because during the docking process on PyRx, we were unsuccessful | However, these results may not be as accurate because during the docking process on PyRx, we were unsuccessful | ||
