BASIL2022GV3HDT: Difference between revisions
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===='''Pfam'''==== | ===='''Pfam'''==== | ||
We used the FASTA sequence from 3HDT to do a comparative search in Pfam<ref>Pfam: The protein families database in 2021: J. Mistry, S. Chuguransky, L. Williams, M. Qureshi, G.A. Salazar, E.L.L. Sonnhammer, S.C.E. Tosatto, L. Paladin, S. Raj, L.J. Richardson, R.D. Finn, A. Bateman | We used the FASTA sequence from 3HDT to do a comparative search in Pfam<ref>Pfam: The protein families database in 2021: J. Mistry, S. Chuguransky, L. Williams, M. Qureshi, G.A. Salazar, E.L.L. Sonnhammer, S.C.E. Tosatto, L. Paladin, S. Raj, L.J. Richardson, R.D. Finn, A. Bateman | ||
Nucleic Acids Research (2020) doi: 10.1093/nar/gkaa913</ref> to find similar protein families that | Nucleic Acids Research (2020) doi: 10.1093/nar/gkaa913</ref> to find similar protein families that the protein may belong to. Pfam predicted that 3HDT is part of the cytidylate kinase-like family which was also shown in the BLASTp results. | ||
[[Image:Pfam search resultsJRAF2022.png |800px| center | thumb | Pfam query aligned with a cytidylate kinase-like family.]] | [[Image:Pfam search resultsJRAF2022.png |800px| center | thumb | Pfam query aligned with a cytidylate kinase-like family.]] | ||
