Scene authoring tools: Difference between revisions

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Uploaded file can have various formats recognized by Jmol's "load" command. For example, you can load a .PNGJ file to load coordinates and a 3D scene in one step.

There is a checkbox to add calculated positions of hydrogen atoms to the structure as it is loaded. This allows to show the multiplicity of bonds (i.e. whether a bond is a single, double or triple bond) in the 3D scenes.

There is a checkbox to add calculated positions of '''hydrogen''' atoms to the structure as it is loaded. This allows to show the multiplicity of bonds (i.e. whether a bond is a single, double or triple bond) in the 3D scenes.

Another optional field allows to enter a text that will be used to filter which atoms of the original model will be either loaded or ignored. You can check the [{{ScriptingDoc}} Jmol Scripting Documentation] for details about the syntax of such filter specifications (in that page, search for <code style="color:maroon">load "filename" FILTER</code>).

Another optional field allows to enter a text that will be used to '''filter''' which atoms of the original model will be either loaded or ignored.

For example, to load just the alpha carbons, to exclude water, include or exclude other hetero groups (ligands), load several biomolecule units...

You can check the [{{ScriptingDoc}} Jmol Scripting Documentation] for details about the syntax of such filter specifications (in that page, search for <code style="color:maroon">load "filename" FILTER</code>).

=='load scene' tab==

Scene authoring tools: Difference between revisions

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@@ Line 42: / Line 42: @@
 Uploaded file can have various formats recognized by Jmol's "load" command. For example, you can load a .PNGJ file to load coordinates and a 3D scene in one step.
-There is a checkbox to add calculated positions of hydrogen atoms to the structure as it is loaded. This allows to show the multiplicity of bonds (i.e. whether a bond is a single, double or triple bond) in the 3D scenes.
+There is a checkbox to add calculated positions of '''hydrogen''' atoms to the structure as it is loaded. This allows to show the multiplicity of bonds (i.e. whether a bond is a single, double or triple bond) in the 3D scenes.
-Another optional field allows to enter a text that will be used to filter which atoms of the original model will be either loaded or ignored. You can check the [{{ScriptingDoc}} Jmol Scripting Documentation] for details about the syntax of such filter specifications (in that page, search for <code style="color:maroon">load "filename" FILTER</code>).
+Another optional field allows to enter a text that will be used to '''filter''' which atoms of the original model will be either loaded or ignored.
+For example, to load just the alpha carbons, to exclude water, include or exclude other hetero groups (ligands), load several biomolecule units...
+You can check the [{{ScriptingDoc}} Jmol Scripting Documentation] for details about the syntax of such filter specifications (in that page, search for <code style="color:maroon">load "filename" FILTER</code>).
 =='load scene' tab==