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==DENV1 SLA top stemloop RNA (DenvTSL)==
==DENV1 SLA top stemloop RNA (DenvTSL)==
<StructureSection load='7ume' size='340' side='right'caption='[[7ume]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
<StructureSection load='7ume' size='340' side='right'caption='[[7ume]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[7ume]] is a 1 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=7lm1 7lm1]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7UME OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7UME FirstGlance]. <br>
<table><tr><td colspan='2'>This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=7lm1 7lm1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7UME OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7UME FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ume FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ume OCA], [https://pdbe.org/7ume PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ume RCSB], [https://www.ebi.ac.uk/pdbsum/7ume PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ume ProSAT]</span></td></tr>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ume FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ume OCA], [https://pdbe.org/7ume PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ume RCSB], [https://www.ebi.ac.uk/pdbsum/7ume PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ume ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Dengue virus, a single-stranded positive sense RNA virus, is the most prevalent mosquito-borne pathogen in the world. Like all RNA viruses, it uses conserved structural elements within its genome to control essential replicative steps. A 70 nucleotides stem-loop RNA structure (called SLA) found at the 5'-end of the genome of all flaviviruses, functions as the promoter for viral replication. This highly conserved structure interacts with the viral polymerase NS5 to initiate RNA synthesis. Here we report the NMR structure of a monomeric SLA from Dengue virus serotype 1, assembled to high-resolution from independently folded structural elements. The DENV1 SLA has an L-shape structure, where the top and side helices are coaxially-stacked and the bottom helix is roughly perpendicular to them. Because the sequence is highly conserved among different flavivirus genomes, it is likely that the three-dimensional fold and local structure of SLA are also conserved among flaviviruses and required for efficient replication. This work provides structural insight into the Dengue promoter and provides the foundation for the discovery of new antiviral drugs that target this essential replicative step.
Structure of the Dengue Virus RNA Promoter.,Sun YT, Varani G RNA. 2022 Jun 24. pii: rna.079197.122. doi: 10.1261/rna.079197.122. PMID:35750488<ref>PMID:35750488</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 7ume" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Structural genomic]]
[[Category: Sun YT]]
[[Category: Sun, Y T]]
[[Category: Varani G]]
[[Category: Varani, G]]
[[Category: 5' utr]]
[[Category: Flavivirus]]
[[Category: Ns5 promoter]]
[[Category: Rna]]
[[Category: Sla]]
[[Category: Viral replication]]

Revision as of 11:11, 31 August 2022

DENV1 SLA top stemloop RNA (DenvTSL)

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