4eq5: Difference between revisions

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==DNA ligase from the archaeon Thermococcus sibiricus==
==DNA ligase from the archaeon Thermococcus sibiricus==
<StructureSection load='4eq5' size='340' side='right' caption='[[4eq5]], [[Resolution|resolution]] 2.85&Aring;' scene=''>
<StructureSection load='4eq5' size='340' side='right'caption='[[4eq5]], [[Resolution|resolution]] 2.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4eq5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thesm Thesm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EQ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4EQ5 FirstGlance]. <br>
<table><tr><td colspan='2'>[[4eq5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_sibiricus_MM_739 Thermococcus sibiricus MM 739]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EQ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4EQ5 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2cfm|2cfm]], [[3gde|3gde]], [[2hiv|2hiv]], [[3rr5|3rr5]]</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4eq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4eq5 OCA], [https://pdbe.org/4eq5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4eq5 RCSB], [https://www.ebi.ac.uk/pdbsum/4eq5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4eq5 ProSAT]</span></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lig, Thermostable ATP-dependent DNA ligase gene Tsib_0885, TSIB_0885 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=604354 THESM])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_ligase_(ATP) DNA ligase (ATP)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.5.1.1 6.5.1.1] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4eq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4eq5 OCA], [http://pdbe.org/4eq5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4eq5 RCSB], [http://www.ebi.ac.uk/pdbsum/4eq5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4eq5 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/C6A2U9_THESM C6A2U9_THESM]] DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.[HAMAP-Rule:MF_00407]  
[[https://www.uniprot.org/uniprot/C6A2U9_THESM C6A2U9_THESM]] DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.[HAMAP-Rule:MF_00407]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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==See Also==
==See Also==
*[[DNA ligase|DNA ligase]]
*[[DNA ligase 3D structures|DNA ligase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Thesm]]
[[Category: Large Structures]]
[[Category: Bezsudnova, E Y]]
[[Category: Thermococcus sibiricus MM 739]]
[[Category: Dorokhov, B D]]
[[Category: Bezsudnova EY]]
[[Category: Dorovatovskiy, P V]]
[[Category: Dorokhov BD]]
[[Category: Kovalchuk, M V]]
[[Category: Dorovatovskiy PV]]
[[Category: Petrova, T]]
[[Category: Kovalchuk MV]]
[[Category: Polyakov, K M]]
[[Category: Petrova T]]
[[Category: Popov, V O]]
[[Category: Polyakov KM]]
[[Category: Ravin, N V]]
[[Category: Popov VO]]
[[Category: Skryabin, K G]]
[[Category: Ravin NV]]
[[Category: Slutskaya, E S]]
[[Category: Skryabin KG]]
[[Category: Adenylation domain]]
[[Category: Slutskaya ES]]
[[Category: Archaeon thermococcus sibiricus]]
[[Category: Atp-dependent thermostable dna ligase]]
[[Category: Dna-binding domain]]
[[Category: Ligase]]
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