4ggj: Difference between revisions

<StructureSection load='4ggj' size='340' side='right'caption='[[4ggj]], [[Resolution|resolution]] 1.75&Aring;' scene=''>

<table><tr><td colspan='2'>[[4ggj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GGJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4GGJ FirstGlance]. <br>

</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ggj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ggj OCA], [https://pdbe.org/4ggj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ggj RCSB], [https://www.ebi.ac.uk/pdbsum/4ggj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ggj ProSAT]</span></td></tr>

[https://www.uniprot.org/uniprot/PLD6_MOUSE PLD6_MOUSE] Regulates mitochondrial shape through facilitating mitochondrial fusion. During spermatogenesis, plays a critical role in PIWI-interacting RNA (piRNA) biogenesis. piRNAs provide essential protection against the activity of mobile genetic elements. piRNA-mediated transposon silencing is thus critical for maintaining genome stability, in particular in germline cells when transposons are mobilized as a consequence of wide-spread genomic demethylation. Has been proposed to act as a cardiolipin hydrolase to generate phosphatidic acid at mitochondrial surface (PubMed:21397848). Although it cannot be excluded that it can act as a phospholipase in some circumstances, it should be noted that cardiolipin hydrolase activity is either undetectable in vitro (PubMed:23064227 and PubMed:23064230), or very low. In addition, cardiolipin is almost exclusively found on the inner mitochondrial membrane, while PLD6 localizes to the outer mitochondrial membrane, facing the cytosol. Has been shown to be a backbone-non-specific, single strand-specific nuclease, cleaving either RNA or DNA substrates with similar affinity (PubMed:23064227 and PubMed:23064230). Produces 5' phosphate and 3' hydroxyl termini, suggesting it could directly participate in the processing of primary piRNA transcripts.<ref>PMID:21397847</ref> <ref>PMID:21397848</ref> <ref>PMID:23064227</ref> <ref>PMID:23064230</ref>  

[[Category: Large Structures]]

[[Category: Mus musculus]]

[[Category: Haase AD]]

[[Category: Hannon GJ]]

[[Category: Ipsaro JJ]]

[[Category: Joshua-Tor L]]