4hni: Difference between revisions

Revision as of 08:28, 3 November 2022

crystal structure of ck1e in complex with PF4800567

Structural highlights

4hni is a 2 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:	16W, SO4
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

KC1E_HUMAN Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. Can phosphorylate a large number of proteins. Participates in Wnt signaling. Phosphorylates DVL1. Central component of the circadian clock. In balance with PP1, determines the circadian period length, through the regulation of the speed and rhythmicity of PER1 and PER2 phospohorylation. Controls PER1 and PER2 nuclear transport and degradation. Inhibits cytokine-induced granuloytic differentiation.^[1] ^[2] ^[3] ^[4]

Publication Abstract from PubMed

Casein kinase 1 epsilon (CK1epsilon) and its closest homologue CK1delta are key regulators of diverse cellular processes. We report two crystal structures of PF4800567, a potent and selective inhibitor of CK1epsilon, bound to the kinase domains of human CK1epsilon and CK1delta as well as one apo CK1epsilon crystal structure. These structures provide a molecular basis for the strong and specific inhibitor interactions with CK1epsilon and suggest clues for further development of CK1delta inhibitors.

Structural Basis for the Potent and Selective Inhibition of Casein Kinase 1 Epsilon.,Long AM, Zhao H, Huang X J Med Chem. 2012 Nov 9. PMID:23106386^[5]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Hino S, Michiue T, Asashima M, Kikuchi A. Casein kinase I epsilon enhances the binding of Dvl-1 to Frat-1 and is essential for Wnt-3a-induced accumulation of beta-catenin. J Biol Chem. 2003 Apr 18;278(16):14066-73. Epub 2003 Jan 28. PMID:12556519 doi:https://dx.doi.org/10.1074/jbc.M213265200
↑ Okamura A, Iwata N, Nagata A, Tamekane A, Shimoyama M, Gomyo H, Yakushijin K, Urahama N, Hamaguchi M, Fukui C, Chihara K, Ito M, Matsui T. Involvement of casein kinase Iepsilon in cytokine-induced granulocytic differentiation. Blood. 2004 Apr 15;103(8):2997-3004. Epub 2004 Jan 8. PMID:15070676 doi:https://dx.doi.org/10.1182/blood-2003-08-2768
↑ Shirogane T, Jin J, Ang XL, Harper JW. SCFbeta-TRCP controls clock-dependent transcription via casein kinase 1-dependent degradation of the mammalian period-1 (Per1) protein. J Biol Chem. 2005 Jul 22;280(29):26863-72. Epub 2005 May 24. PMID:15917222 doi:https://dx.doi.org/10.1074/jbc.M502862200
↑ Partch CL, Shields KF, Thompson CL, Selby CP, Sancar A. Posttranslational regulation of the mammalian circadian clock by cryptochrome and protein phosphatase 5. Proc Natl Acad Sci U S A. 2006 Jul 5;103(27):10467-72. Epub 2006 Jun 21. PMID:16790549 doi:https://dx.doi.org/10.1073/pnas.0604138103
↑ Long AM, Zhao H, Huang X. Structural Basis for the Potent and Selective Inhibition of Casein Kinase 1 Epsilon. J Med Chem. 2012 Nov 9. PMID:23106386 doi:https://dx.doi.org/10.1021/jm301336n

Proteopedia Page Contributors and Editors (what is this?)

OCA

[1] Hino S, Michiue T, Asashima M, Kikuchi A. Casein kinase I epsilon enhances the binding of Dvl-1 to Frat-1 and is essential for Wnt-3a-induced accumulation of beta-catenin. J Biol Chem. 2003 Apr 18;278(16):14066-73. Epub 2003 Jan 28. PMID:12556519 doi:https://dx.doi.org/10.1074/jbc.M213265200

[2] Okamura A, Iwata N, Nagata A, Tamekane A, Shimoyama M, Gomyo H, Yakushijin K, Urahama N, Hamaguchi M, Fukui C, Chihara K, Ito M, Matsui T. Involvement of casein kinase Iepsilon in cytokine-induced granulocytic differentiation. Blood. 2004 Apr 15;103(8):2997-3004. Epub 2004 Jan 8. PMID:15070676 doi:https://dx.doi.org/10.1182/blood-2003-08-2768

[3] Shirogane T, Jin J, Ang XL, Harper JW. SCFbeta-TRCP controls clock-dependent transcription via casein kinase 1-dependent degradation of the mammalian period-1 (Per1) protein. J Biol Chem. 2005 Jul 22;280(29):26863-72. Epub 2005 May 24. PMID:15917222 doi:https://dx.doi.org/10.1074/jbc.M502862200

[4] Partch CL, Shields KF, Thompson CL, Selby CP, Sancar A. Posttranslational regulation of the mammalian circadian clock by cryptochrome and protein phosphatase 5. Proc Natl Acad Sci U S A. 2006 Jul 5;103(27):10467-72. Epub 2006 Jun 21. PMID:16790549 doi:https://dx.doi.org/10.1073/pnas.0604138103

[5] Long AM, Zhao H, Huang X. Structural Basis for the Potent and Selective Inhibition of Casein Kinase 1 Epsilon. J Med Chem. 2012 Nov 9. PMID:23106386 doi:https://dx.doi.org/10.1021/jm301336n

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[5]

@@ Line 1: / Line 1: @@
 ==crystal structure of ck1e in complex with PF4800567==
-<StructureSection load='4hni' size='340' side='right' caption='[[4hni]], [[Resolution|resolution]] 2.74&Aring;' scene=''>
+<StructureSection load='4hni' size='340' side='right'caption='[[4hni]], [[Resolution|resolution]] 2.74&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4hni]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HNI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4HNI FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4hni]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HNI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4HNI FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=16W:3-[(3-CHLOROPHENOXY)METHYL]-1-(TETRAHYDRO-2H-PYRAN-4-YL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE'>16W</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=16W:3-[(3-CHLOROPHENOXY)METHYL]-1-(TETRAHYDRO-2H-PYRAN-4-YL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE'>16W</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4hnk|4hnk]], [[4hok|4hok]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4hni FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hni OCA], [https://pdbe.org/4hni PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4hni RCSB], [https://www.ebi.ac.uk/pdbsum/4hni PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4hni ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CSNK1E ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Non-specific_serine/threonine_protein_kinase Non-specific serine/threonine protein kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4hni FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hni OCA], [http://pdbe.org/4hni PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4hni RCSB], [http://www.ebi.ac.uk/pdbsum/4hni PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4hni ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/KC1E_HUMAN KC1E_HUMAN]] Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. Can phosphorylate a large number of proteins. Participates in Wnt signaling. Phosphorylates DVL1. Central component of the circadian clock. In balance with PP1, determines the circadian period length, through the regulation of the speed and rhythmicity of PER1 and PER2 phospohorylation. Controls PER1 and PER2 nuclear transport and degradation. Inhibits cytokine-induced granuloytic differentiation.<ref>PMID:12556519</ref> <ref>PMID:15070676</ref> <ref>PMID:15917222</ref> <ref>PMID:16790549</ref>
+[https://www.uniprot.org/uniprot/KC1E_HUMAN KC1E_HUMAN] Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. Can phosphorylate a large number of proteins. Participates in Wnt signaling. Phosphorylates DVL1. Central component of the circadian clock. In balance with PP1, determines the circadian period length, through the regulation of the speed and rhythmicity of PER1 and PER2 phospohorylation. Controls PER1 and PER2 nuclear transport and degradation. Inhibits cytokine-induced granuloytic differentiation.<ref>PMID:12556519</ref> <ref>PMID:15070676</ref> <ref>PMID:15917222</ref> <ref>PMID:16790549</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 23: / Line 20: @@
 ==See Also==
-*[[Casein kinase|Casein kinase]]
+*[[Casein kinase 3D structures|Casein kinase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Human]]
+[[Category: Homo sapiens]]
-[[Category: Non-specific serine/threonine protein kinase]]
+[[Category: Large Structures]]
-[[Category: Huang, X]]
+[[Category: Huang X]]
-[[Category: Long, A M]]
+[[Category: Long AM]]
-[[Category: Zhao, H]]
+[[Category: Zhao H]]
-[[Category: Ck1e]]
-[[Category: Inhibitor]]
-[[Category: Kinase]]
-[[Category: Pf4800567]]
-[[Category: Transferase-transferase inhibitor complex]]

4hni: Difference between revisions

Revision as of 08:28, 3 November 2022

crystal structure of ck1e in complex with PF4800567

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

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