4lyl: Difference between revisions

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<StructureSection load='4lyl' size='340' side='right'caption='[[4lyl]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
<StructureSection load='4lyl' size='340' side='right'caption='[[4lyl]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4lyl]] is a 16 chain structure with sequence from [http://en.wikipedia.org/wiki/Atlantic_cod Atlantic cod] and [http://en.wikipedia.org/wiki/Bppb2 Bppb2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LYL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4LYL FirstGlance]. <br>
<table><tr><td colspan='2'>[[4lyl]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_phage_PBS2 Bacillus phage PBS2] and [https://en.wikipedia.org/wiki/Gadus_morhua Gadus morhua]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LYL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4LYL FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1okb|1okb]]</td></tr>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4lyl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lyl OCA], [https://pdbe.org/4lyl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4lyl RCSB], [https://www.ebi.ac.uk/pdbsum/4lyl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4lyl ProSAT]</span></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ung1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=8049 Atlantic cod]), UGI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10684 BPPB2])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Uridine_nucleosidase Uridine nucleosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.3 3.2.2.3] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4lyl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lyl OCA], [http://pdbe.org/4lyl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4lyl RCSB], [http://www.ebi.ac.uk/pdbsum/4lyl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4lyl ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/Q9I983_GADMO Q9I983_GADMO]] Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine (By similarity).[RuleBase:RU003780][HAMAP-Rule:MF_03166] [[http://www.uniprot.org/uniprot/UNGI_BPPB2 UNGI_BPPB2]] This protein binds specifically and reversibly to the host uracil-DNA glycosylase, preventing removal of uracil residues from PBS2 DNA by the host uracil-excision repair system.
[https://www.uniprot.org/uniprot/Q9I983_GADMO Q9I983_GADMO] Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine (By similarity).[RuleBase:RU003780][HAMAP-Rule:MF_03166]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Atlantic cod]]
[[Category: Bacillus phage PBS2]]
[[Category: Bppb2]]
[[Category: Gadus morhua]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Uridine nucleosidase]]
[[Category: Assefa NG]]
[[Category: Assefa, N G]]
[[Category: Johnson KA]]
[[Category: Johnson, K A]]
[[Category: Leiros H-KS]]
[[Category: Leiros, H K.S]]
[[Category: Moe E]]
[[Category: Moe, E]]
[[Category: Niiranen LMK]]
[[Category: Niiranen, L M.K]]
[[Category: Smalas AO]]
[[Category: Smalas, A O]]
[[Category: Willassen NP]]
[[Category: Willassen, N P]]
[[Category: Alpha/beta fold]]
[[Category: Hydrolase-hydrolase inhibitor complex]]
[[Category: Hydrolysis]]
[[Category: Intracellular]]
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