4o61: Difference between revisions

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==Structure of human ALKBH5 crystallized in the presence of citrate==
==Structure of human ALKBH5 crystallized in the presence of citrate==
<StructureSection load='4o61' size='340' side='right' caption='[[4o61]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='4o61' size='340' side='right'caption='[[4o61]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4o61]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O61 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4O61 FirstGlance]. <br>
<table><tr><td colspan='2'>[[4o61]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O61 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4O61 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ALKBH5, ABH5, OFOXD1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4o61 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o61 OCA], [https://pdbe.org/4o61 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4o61 RCSB], [https://www.ebi.ac.uk/pdbsum/4o61 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4o61 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4o61 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o61 OCA], [http://pdbe.org/4o61 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4o61 RCSB], [http://www.ebi.ac.uk/pdbsum/4o61 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4o61 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/ALKB5_HUMAN ALKB5_HUMAN]] Dioxygenase that demethylates RNA by oxidative demethylation: specifically demethylates N(6)-methyladenosine (m(6)A) RNA, the most prevalent internal modification of messenger RNA (mRNA) in higher eukaryotes. Requires molecular oxygen, alpha-ketoglutarate and iron. Demethylation of m(6)A mRNA affects mRNA processing and export and is required for spermatogenesis.<ref>PMID:21264265</ref> <ref>PMID:23177736</ref>
[https://www.uniprot.org/uniprot/ALKB5_HUMAN ALKB5_HUMAN] Dioxygenase that demethylates RNA by oxidative demethylation: specifically demethylates N(6)-methyladenosine (m(6)A) RNA, the most prevalent internal modification of messenger RNA (mRNA) in higher eukaryotes. Requires molecular oxygen, alpha-ketoglutarate and iron. Demethylation of m(6)A mRNA affects mRNA processing and export and is required for spermatogenesis.<ref>PMID:21264265</ref> <ref>PMID:23177736</ref>  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 4o61" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 4o61" style="background-color:#fffaf0;"></div>
==See Also==
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Human]]
[[Category: Homo sapiens]]
[[Category: Arrowsmith, C H]]
[[Category: Large Structures]]
[[Category: Bountra, C]]
[[Category: Arrowsmith CH]]
[[Category: Cerovina, T]]
[[Category: Bountra C]]
[[Category: Chao, X]]
[[Category: Cerovina T]]
[[Category: Dong, A]]
[[Category: Chao X]]
[[Category: Edwards, A M]]
[[Category: Dong A]]
[[Category: He, H]]
[[Category: Edwards AM]]
[[Category: Liu, K]]
[[Category: He H]]
[[Category: Min, J]]
[[Category: Liu K]]
[[Category: Structural genomic]]
[[Category: Min J]]
[[Category: Tempel, W]]
[[Category: Tempel W]]
[[Category: Dioxygenase]]
[[Category: Oxidoreductase]]
[[Category: Rna demethylase]]
[[Category: Sgc]]
Retrieved from "https://proteopedia.org/4o61"