DNA polymerase 3D structures: Difference between revisions
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*DNA polymerase I | *DNA polymerase I | ||
**[[1taq]] – TaDpo I - | **[[1taq]] – TaDpo I - Thermus aquaticus<br /> | ||
**[[1jxe]] – TaDpo I Stoffel fragment 290-832<br /> | **[[1jxe]] – TaDpo I Stoffel fragment 290-832<br /> | ||
**[[5ktq]] – TaDpo I Stoffel fragment + nucleotide<br /> | **[[5ktq]] – TaDpo I Stoffel fragment + nucleotide<br /> | ||
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**[[5oxj]] – TaDpo I + DNA + GMP derivative + imidazole derivative<br /> | **[[5oxj]] – TaDpo I + DNA + GMP derivative + imidazole derivative<br /> | ||
**[[3ojs]], [[3oju]], [[1tau]], [[4dle]], [[4dlg]], [[4elt]], [[4elu]], [[4elv]] - TaDpo I + DNA<br /> | **[[3ojs]], [[3oju]], [[1tau]], [[4dle]], [[4dlg]], [[4elt]], [[4elu]], [[4elv]] - TaDpo I + DNA<br /> | ||
**[[4flt]], [[4flu]], [[4flv]], [[4flw]], [[4flx]], [[4fly]], [[4flz]], [[4fm0]], [[4fm1]], [[4fm2]] – | **[[4flt]], [[4flu]], [[4flv]], [[4flw]], [[4flx]], [[4fly]], [[4flz]], [[4fm0]], [[4fm1]], [[4fm2]] – PaDpo I + DNA – Pyrococcus abyssi<br /> | ||
**[[1s5j]] – SsDpo I - | **[[1s5j]] – SsDpo I - Sulfolobus solfataricus<br /> | ||
**[[6dsy]], [[6dsx]], [[6dsw]], [[6dsv]], [[6dsu]], [[7k5o]], [[7k5p]], [[7k5r]], [[7k5s]], [[7k5u]] - GsDpo I + DNA - | **[[6dsy]], [[6dsx]], [[6dsw]], [[6dsv]], [[6dsu]], [[7k5o]], [[7k5p]], [[7k5r]], [[7k5q]], [[7k5s]], [[7k5t]], [[7k5u]] - GsDpo I + DNA - Geobacillus stearothermophilus<br /> | ||
**[[3eyz]], [[6p5c]] - GsDpo I (mutant) + DNA <br /> | **[[3eyz]], [[6p5c]] - GsDpo I (mutant) + DNA <br /> | ||
**[[6mu5]], [[6mu4]], [[6ur2]], [[6ur4]] - GsDpo I + DNA + nucleotide derivative <br /> | **[[6mu5]], [[6mu4]], [[6ur2]], [[6ur4]] - GsDpo I + DNA + nucleotide derivative <br /> | ||
**[[3ez5]], [[6ueu]], [[6ur9]], [[6us5]] - GsDpo I (mutant) + DNA + nucleotide <br /> | **[[3ez5]], [[6ueu]], [[6ur9]], [[6us5]] - GsDpo I (mutant) + DNA + nucleotide <br /> | ||
**[[3pv8]], [[3px0]], [[3px4]], [[3px6]], [[4dqi]], [[4dqp]], [[4dqq]], [[4dqr]], [[4dqs]], [[4ds4]], [[4ds5]], [[4dse]], [[4dsf]], [[4e0d]], [[4ez6]], [[4ez9]], [[4f2r]], [[4f2s]], [[4f3o]], [[4f4k]], [[4f8r]] - GkDpo I (mutant) + DNA – | **[[3pv8]], [[3px0]], [[3px4]], [[3px6]], [[4dqi]], [[4dqp]], [[4dqq]], [[4dqr]], [[4dqs]], [[4ds4]], [[4ds5]], [[4dse]], [[4dsf]], [[4e0d]], [[4ez6]], [[4ez9]], [[4f2r]], [[4f2s]], [[4f3o]], [[4f4k]], [[4f8r]] - GkDpo I (mutant) + DNA – Geobacillus kaustophilus<br /> | ||
**[[6vdc]], [[6vde]] – MsPol I – | **[[6vdc]], [[6vde]] – MsPol I – Mycobacterium smegmatis<br /> | ||
**[[6vdd]] - MsDpo I + DNA + nucleotide derivative <br /> | **[[6vdd]] - MsDpo I + DNA + nucleotide derivative <br /> | ||
**[[7pbk]] – Dpo I – Vibrio phage<br /> | **[[7pbk]] – Dpo I – Vibrio phage<br /> | ||
**[[7r0k]] – Dpo I – Thermus phage<br /> | |||
*DNA polymerase I klenow fragment | *DNA polymerase I klenow fragment or Taq polymerase | ||
**[[2kzz]], [[1d8y]], [[2kzm]] – EcDpo I - | **[[2kzz]], [[1d8y]], [[2kzm]] – EcDpo I - Escherichia coli<br /> | ||
**[[1qsl]] - EcDpo I + DNA<br /> | **[[1qsl]] - EcDpo I + DNA<br /> | ||
**[[1kfs]], [[1krp]], [[1ksp]], [[1kln]] - EcDpo I (mutant) + DNA<br /> | |||
**[[1kfd]], [[1dpi]] - EcDpo I + nucleotide<br /> | **[[1kfd]], [[1dpi]] - EcDpo I + nucleotide<br /> | ||
**[[1d9d]], [[1d9f]], [[2kfn]] - EcDpo I + DNA + nucleotide<br /> | **[[1d9d]], [[1d9f]], [[2kfn]] - EcDpo I + DNA + nucleotide<br /> | ||
**[[2kfz]] - EcDpo I (mutant) + DNA + nucleotide<br /> | |||
**[[1ktq]] - TaDpo I <br /> | **[[1ktq]] - TaDpo I <br /> | ||
**[[3po4]], [[3po5]], [[3rtv]], [[3sv3]], [[3sv4]], [[3syz]], [[3sz2]], [[4c8k]], [[4c8l]], [[4c8m]], [[4c8n]], [[4c8o]], [[4cch]] - TaDpo I + DNA<br /> | **[[3po4]], [[3po5]], [[3rtv]], [[3sv3]], [[3sv4]], [[3syz]], [[3sz2]], [[4c8k]], [[4c8l]], [[4c8m]], [[4c8n]], [[4c8o]], [[4cch]] - TaDpo I + DNA<br /> | ||
**[[4bwm]], [[4bwj]] - TaDpo I + DNA + RNA<br /> | **[[4bwm]], [[4bwj]] - TaDpo I + DNA + RNA<br /> | ||
**[[3py8]] - TaDpo I (mutant) + DNA<br /> | |||
**[[3m8r]], [[3m8s]], [[3lwl]], [[3lwm]], [[1qss]], [[1qsy]], [[1qtm]], [[2ktq]], [[3ktq]], [[4ktq]], [[3rr7]], [[3rr8]], [[3rrg]], [[3rrh]], [[3t3f]], [[4df4]], [[4df8]], [[4dfj]], [[4dfk]], [[4dfm]], [[4dfp]], [[7owf]] - TaDpo I + DNA + nucleotide<br /> | |||
**[[3rrg]], [[4n56]], [[4n5s]], [[4xiu]] - TaDpo I (mutant) + DNA + nucleotide<br /> | |||
**[[1xwl]] - GsDpo I <br /> | |||
**[[2xo7]], [[3hp6]], [[3hpo]], [[2hhq]], [[2hhs]], [[2hht]], [[2hhu]], [[2hhv]], [[2hhw]], [[2hhx]], [[2hvh]], [[2hvi]], [[2hw3]], [[1xc9]], [[1ua0]], [[1ua1]], [[1njw]], [[1njx]], [[1njy]], [[1njz]], [[1nk0]], [[1nk4]], [[1nk5]], [[1nk6]], [[1nk7]], [[1nk8]], [[1nk9]], [[1nkb]], [[1nkc]], [[1nke]], [[1l3s]], [[2bdp]], [[4bdp]], [[2xy5]], [[2xy6]], [[2xy7]], [[2y1i]], [[2y1j]], [[3tan]], [[3tap]], [[3taq]], [[3tar]], [[3thv]], [[4b9l]], [[4b9m]], [[4b9n]], [[4b9s]], [[4b9t]], [[4b9u]], [[4b9v]] - GsDpo I + DNA<br /> | **[[2xo7]], [[3hp6]], [[3hpo]], [[2hhq]], [[2hhs]], [[2hht]], [[2hhu]], [[2hhv]], [[2hhw]], [[2hhx]], [[2hvh]], [[2hvi]], [[2hw3]], [[1xc9]], [[1ua0]], [[1ua1]], [[1njw]], [[1njx]], [[1njy]], [[1njz]], [[1nk0]], [[1nk4]], [[1nk5]], [[1nk6]], [[1nk7]], [[1nk8]], [[1nk9]], [[1nkb]], [[1nkc]], [[1nke]], [[1l3s]], [[2bdp]], [[4bdp]], [[2xy5]], [[2xy6]], [[2xy7]], [[2y1i]], [[2y1j]], [[3tan]], [[3tap]], [[3taq]], [[3tar]], [[3thv]], [[4b9l]], [[4b9m]], [[4b9n]], [[4b9s]], [[4b9t]], [[4b9u]], [[4b9v]] - GsDpo I + DNA<br /> | ||
**[[4dsi]], [[4dsj]], [[4dsk]], [[4dsl]], [[4dwi]] - GsDpo I (mutant) + DNA<br /> | **[[4dsi]], [[4dsj]], [[4dsk]], [[4dsl]], [[4dwi]] - GsDpo I (mutant) + DNA<br /> | ||
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**[[3k5n]] - EcDpo II (mutant) + DNA<br /> | **[[3k5n]] - EcDpo II (mutant) + DNA<br /> | ||
**[[3k5o]], [[1q8i]] - EcDpo II (mutant) <br /> | **[[3k5o]], [[1q8i]] - EcDpo II (mutant) <br /> | ||
**[[3o59]] - PhDpo II large subunit | **[[3o59]], [[5bkh]] - PhDpo II large subunit - Pyrococcus horikoshii<br /> | ||
**[[2kxe]] - PhDpo II small subunit<br /> | **[[2kxe]] - PhDpo II small subunit<br /> | ||
**[[1qqc]] – DeDpo II – Desulfurococcus<br /> | |||
**[[5ijl]] - PaDpo II large subunit <br /> | **[[5ijl]] - PaDpo II large subunit <br /> | ||
**[[5ihe]] - PaDpo II small subunit <br /> | **[[5ihe]] - PaDpo II small subunit <br /> | ||
**[[6hmf]] - PaDpo II small subunit (mutant)<br /> | **[[6hmf]] - PaDpo II small subunit (mutant)<br /> | ||
**[[6hms]] - PaDpo II small+large subunits + DNA – Cryo EM <br /> | **[[6hms]] - PaDpo II small+large subunits + DNA – Cryo EM <br /> | ||
**[[6knb]], [[6knc]] - TkPol II small+large subunits + PCNA + DNA - | **[[6knb]], [[6knc]] - TkPol II small+large subunits + PCNA + DNA - Thermococcus kodakarensis – Cryo EM <br /> | ||
**[[7rsr]], [[7rss]], [[7rsu]], [[7tqw]] - TkPol + purine derivative + DNA <br /> | |||
**[[7om3]], [[7omb]], [[7omg]] - TkPol + DNA + nucleotide<br /> | |||
**[[7e15]] - TkPol II small subunit + GINS51 + ssDNA-specific exonuclease<br /> | |||
*DNA polymerase III subunit | *DNA polymerase III subunit alpha | ||
**[[2hnh]], [[2hqa]] - EcDpo III subunit | **[[2hnh]], [[2hqa]] - EcDpo III subunit catalytic fragment<br /> | ||
**[[ | **[[4jom]] - EcDpo III subunit catalytic fragment (mutant)<br /> | ||
**[[5m1s]], [[5fkw]], [[5fkv]], [[5fku]] - EcDpo III (mutant) subunits + DNA – Cryo EM<br /> | |||
**[[5m1s]], [[5fkw]], [[5fkv]], [[5fku]] - EcDpo III | |||
**[[1ok7]] - EcDpo III residues 1-366 + EcDpo IV C-terminal<br /> | **[[1ok7]] - EcDpo III residues 1-366 + EcDpo IV C-terminal<br /> | ||
**[[1zd7]], [[1zde]], [[3nzm]], [[5ol5]], [[5ol1]] - SyDpo III | **[[2hpi]], [[2hpm]] - TaDpo III subunit<br /> | ||
**[[4gig]] - SyDpo III | **[[3e0d]] - TaDpo III subunit + DNA<br /> | ||
**[[2keq]], [[4kl5]], [[4kl6]] - NpDpo III | **[[3f2b]], [[3f2c]], [[3f2d]], [[4iqj]] – GkDpo III subunit + DNA + nucleotide <br /> | ||
**[[4lx3]], [[4qfq]] - NpDpo III | **[[1zd7]], [[1zde]], [[3nzm]], [[5ol5]], [[5ol1]] - SyDpo III subunit – Synechocystis<br /> | ||
**[[5lew]] - MtPol III | **[[4gig]] - SyDpo III subunit (mutant) <br /> | ||
**[[2keq]], [[4kl5]], [[4kl6]] - NpDpo III subunit – Nostoc punctiforme<br /> | |||
**[[4lx3]], [[4qfq]] - NpDpo III subunit + nucleic acid binding tRNA/helicase<br /> | |||
**[[5lew]] - MtPol III subunit – Mycobacterrium tuberculosis<br /> | |||
**[[7pu7]] - MtDpo III subunit + DNA<br /> | |||
*DNA polymerase III subunit | *DNA polymerase III subunit beta or sliding clamp | ||
**[[2pol]], [[4k3s]], [[4pnv]], [[4pnw]] - EcDpo III subunit | **[[1mmi]], [[2pol]], [[4k3s]], [[4pnv]], [[4pnw]] - EcDpo III subunit <br /> | ||
**[[2xur]], [[3f1v]], [[3pwe]] - EcDpo III subunit | **[[2xur]], [[3f1v]], [[3pwe]] - EcDpo III subunit (mutant) <br /> | ||
**[[2avt]] - Dpo III | **[[3d1e]] - EcDpo III subunit + EcDpo II C-terminal<br /> | ||
**[[2awa]] - Dpo III | **[[1unn]] - EcDpo III subunit + EcDpo IV little finger<br /> | ||
**[[4trt]] – DrDpo III | **[[2avt]] - Dpo III subunit – Streptococcus pyogenes<br /> | ||
**[[2p1j]] – TmDpo III exonuclease domain – | **[[2awa]] - Dpo III subunit – Streptococcus pneumoniae<br /> | ||
**[[1vpk]] - TmDpo III | **[[4trt]] – DrDpo III subunit – Deinococcus radiodurans<br /> | ||
**[[3t0p]] - Dpo III | **[[2p1j]] – TmDpo III exonuclease domain – Thermotoga maritima<br /> | ||
**[[6ap4]] - Dpo III | **[[1vpk]] - TmDpo III subunit<br /> | ||
**[[6amq]] - Dpo III | **[[3t0p]] - Dpo III subunit – Eubacterium rectale<br /> | ||
**[[5wyp]], [[5wce]], [[6izo]], [[6jir]] - Dpo III | **[[6ap4]] - Dpo III subunit – Acinetobacter baumannii<br /> | ||
**[[5w7z]] - RcDpo III | **[[6amq]] - Dpo III subunit – Enterobacter cloacae<br /> | ||
**[[6man]] - Dpo III | **[[5wyp]], [[5wce]], [[6izo]], [[6jir]] - Dpo III subunit – Caulobacter crescentus<br /> | ||
**[[6d46]] - RtDpo III | **[[5w7z]] - RcDpo III subunit – Rickettsia conorii<br /> | ||
**[[6dlk]] - | **[[6man]] - Dpo III subunit – Rickettsia bellii<br /> | ||
**[[6d47]] - | **[[6d46]] - RtDpo III subunit – Rickettsia typhi<br /> | ||
**[[1jqj]], [[1jql]] - EcDpo III subunit | **[[6dlk]] - RrDpo III subunit – Rickettsia rickettsii<br /> | ||
**[[4tr6]] - Pol III | **[[6d47]] - MmDpo III subunit – Mycobacterium marinum<br /> | ||
**[[3p16]], [[3rb9]], [[4tr7]] - MtPol III | **[[1jqj]], [[1jql]] - EcDpo III subunit (mutant) <br /> | ||
**[[4tr8]], [[6ams]] - PsaPol III | **[[4tr6]] - Pol III subunit – Bacillus subtilis<br /> | ||
**[[6pth]] - PsaPol III | **[[3p16]], [[3rb9]], [[4tr7]] - MtPol III subunit <br /> | ||
**[[4s3i]], [[4rki]] - HpPol III | **[[4tr8]], [[6ams]] - PsaPol III subunit – Pseudomonas aeruginosa<br /> | ||
**[[6aig]] - Dpo III | **[[6pth]] - PsaPol III subunit + griselimycin<br /> | ||
**[[6deg]] - | **[[4s3i]], [[4rki]] - HpPol III subunit – Helicobacter pylori<br /> | ||
**[[6aig]] - Dpo III subunit – Aeropyrum pernix<br /> | |||
**[[6deg]] - BbDpo III subunit – Bartonella birtlesii<br /> | |||
**[[7rzm]] - Dpo III subunit – Stenotrophomonas maltophilia<br /> | |||
**[[8dt6]] - Dpo III subunit – Elizabethkingia anophelis<br /> | |||
*DNA polymerase III subunit beta or sliding clamp complex | *DNA polymerase III subunit beta or sliding clamp complex | ||
**[[3d1g]], [[3qsb]], [[4k3k]], [[4k3l]], [[4mjp]], [[4mjq]], [[4mjr]], [[4n94]], [[4n95]], [[4n96]], [[4n97]], [[4n98]], [[4n99]], [[4n9a]], [[4ovf]], [[4ovg]], [[4ovh]], [[4pnu ]] - EcDpo III subunit | **[[3d1g]], [[3qsb]], [[4k3k]], [[4k3l]], [[4mjp]], [[4mjq]], [[4mjr]], [[4n94]], [[4n95]], [[4n96]], [[4n97]], [[4n98]], [[4n99]], [[4n9a]], [[4ovf]], [[4ovg]], [[4ovh]], [[4pnu ]] - EcDpo III subunit + inhibitor<br /> | ||
**[[3bep]] - EcDpo III subunit | **[[3bep]] - EcDpo III subunit + DNA<br /> | ||
**[[5x06]] - EcDpo III subunit | **[[5x06]] - EcDpo III subunit + DnaA regulatory inactivator<br /> | ||
**[[3d1f]], [[3q4j]], [[3q4k]], [[3q4l]], [[4k3l]], [[4k3m]], [[4k3o]], [[4k3p]], [[4k3q]], [[4k3r]], [[4k74]], [[6fvl]] - EcDpo III | **[[3d1f]], [[3q4j]], [[3q4k]], [[3q4l]], [[4k3l]], [[4k3m]], [[4k3o]], [[4k3p]], [[4k3q]], [[4k3r]], [[4k74]], [[6fvl]], [[7az5]], [[7az6]], [[7az7]], [[7az8]], [[7azc]], [[7azd]], [[7aze]], [[7azf]], [[7azg]], [[7azk]], [[7azl]] - EcDpo III subunit + polypeptide<br /> | ||
**[[6fvm]] - EcDpo III | **[[6fvm]] - EcDpo III subunit (mutant) + P7 peptide<br /> | ||
**[[5g4q]], [[5g48]], [[5fxt]], [[5fve]] - HpPol III | **[[5g4q]], [[5g48]], [[5fxt]], [[5fve]] - HpPol III subunit + NSAID drug <br /> | ||
**[[5frq]] - HpPol III | **[[5frq]] - HpPol III subunit + DNA ligase peptide<br /> | ||
**[[5dai]] - TkPol III | **[[5dai]] - TkPol III subunit + FEN-1 peptide <br /> | ||
**[[5ah4]], [[5ah2]], [[5agv]], [[5agu]] – MsPol III | **[[5ah4]], [[5ah2]], [[5agv]], [[5agu]] – MsPol III subunit + gricelimycin <br /> | ||
**[[6drt]] – T4Dpo III | **[[6drt]] – T4Dpo III subunit + polypeptide - Enterobacteria phage T4<br /> | ||
**[[6dj8]] – Dpo III | **[[6dj8]] – Dpo III subunit + polypeptide – Borrelia burgdorferi<br /> | ||
**[[6fvo]], [[6fvn]] - MtPol III | **[[6fvo]], [[6fvn]] - MtPol III subunit + P7 peptide<br /> | ||
**[[6t7x]] - PaPol III | **[[6t7x]] - PaPol III subunit <br /> | ||
**[[4tsz]], [[6t7y]] - PaPol III | **[[4tsz]], [[6t7y]] - PaPol III subunit + peptide<br /> | ||
**[[6t8h]] - PaPol III | **[[6t8h]] - PaPol III subunit + Dol II small subunit + DP2 – Cryo EM<br /> | ||
**[[6djk]] - RtDpo III | **[[6djk]] - RtDpo III subunit + polypeptide <br /> | ||
**[[6dm6]] - RcPol III | **[[6dm6]] - RcPol III subunit + peptide<br /> | ||
**[[6dly]] - MmPol III subunit + peptide<br /> | |||
**[[6ptv]] - RrPol III subunit + griselimycin<br /> | |||
**[[6ptr]] - BbPol III subunit + griselimycin<br /> | |||
*DNA polymerase III subunit | *DNA polymerase III subunit gamma | ||
**[[1njf]], [[1njg]] - EcDpo III subunit | **[[5c51]], [[5c52]], [[5c53]] - hDpo III subunit + DNA + nucleotide<br /> | ||
**[[2gno]] - TmDpo III | **[[1njf]], [[1njg]] - EcDpo III subunit N-terminal domains 1-2<br /> | ||
**[[1xxh]], [[1jr3]] - EcDpo III subunit | **[[2gno]] - TmDpo III subunit<br /> | ||
**[[1xxi]] - EcDpo III subunit | **[[1xxh]], [[1jr3]] - EcDpo III subunit ’ <br /> | ||
**[[1xxi]] - EcDpo III subunit ’ + nucleotide<br /> | |||
*DNA polymerase III subunit | *DNA polymerase III subunit delta | ||
**[[1a5t]] - EcDpo III subunit | **[[1jqj]], [[1jql]] - EcDpo III subunit (mutant) <br /> | ||
**[[1xxh]], [[1jr3]] - EcDpo III subunit | **[[1a5t]] - EcDpo III subunit ’ <br /> | ||
**[[1xxi]] - EcDpo III subunit | **[[1xxh]], [[1jr3]] - EcDpo III subunit ’ <br /> | ||
**[[3glh]] - EcDpo III subunit | **[[1xxi]] - EcDpo III subunit ’ + nucleotide<br /> | ||
**[[3glf]] - EcDpo III subunit | **[[3glh]] - EcDpo III subunit ’<br /> | ||
**[[3gli]] - EcDpo III subunit | **[[3glf]] - EcDpo III subunit ’ DNA<br /> | ||
**[[3gli]] - EcDpo III subunit ’ DNA<br /> | |||
**[[3glg]] - EcDpo III subunit ’mutant DNA<br /> | |||
*DNA polymerase III subunit | *DNA polymerase III subunit epsilon | ||
**[[2gui]] – EcDpo III subunit | **[[2gui]] – EcDpo III subunit N-terminal<br /> | ||
**[[1j53]], [[1j54]] - EcDpo III subunit | **[[1j53]], [[1j54]] - EcDpo III subunit N-terminal exonuclease domain<br /> | ||
**[[2ido]] - EcDpo III subunit | **[[2ido]] - EcDpo III subunit + HOT protein<br /> | ||
**[[4gx8]] - EcDpo III ε subunit/ EcDpo III α subunit<br /> | **[[4gx8]] - EcDpo III ε subunit/ EcDpo III α subunit<br /> | ||
**[[2xy8]] - EcDpo III subunit | **[[4gx9]] - EcDpo III ε subunit/ EcDpo III α subunit (mutant)<br /> | ||
**[[2xy8]] - EcDpo III subunit ,<br /> | |||
*DNA polymerase III subunit | *DNA polymerase III subunit tau | ||
**[[2aya]] - EcDpo III subunit | **[[2aya]] - EcDpo III subunit <br /> | ||
**[[3glh]] - EcDpo III subunit | **[[3glh]] - EcDpo III subunit ’<br /> | ||
**[[3glf]] - EcDpo III subunit | **[[3glf]] - EcDpo III subunit ’ DNA<br /> | ||
**[[3glg]] - EcDpo III subunit ’mutant DNA<br /> | |||
*DNA polymerase III subunit xi | *DNA polymerase III subunit xi | ||
**[[3gli]] - EcDpo III subunit | **[[3gli]] - EcDpo III subunit ’ DNA<br /> | ||
*DNA polymerase III subunit | *DNA polymerase III subunit theta | ||
**[[2xy8]] - EcDpo III subunit | **[[2xy8]] - EcDpo III subunit ,<br /> | ||
**[[2axd]], [[2ae9]], [[1du2]] - EcDpo III subunit | **[[2axd]], [[2ae9]], [[1du2]] - EcDpo III subunit - NMR<br /> | ||
*DNA polymerase III subunit | *DNA polymerase III subunit chi+phi | ||
**[[1em8]] - EcDpo III subunit | **[[1em8]] - EcDpo III subunit ,<br /> | ||
**[[3sxu]] - EcDpo III subunit | **[[3sxu]] - EcDpo III subunit , + peptide<br /> | ||
*DNA polymerase IV | *DNA polymerase IV | ||
| Line 167: | Line 186: | ||
**[[6jup]], [[6juq]] - EcPol IV (mutant) + DNA + nucleotide<br /> | **[[6jup]], [[6juq]] - EcPol IV (mutant) + DNA + nucleotide<br /> | ||
**[[2rdi]] - SsPol IV <br /> | **[[2rdi]] - SsPol IV <br /> | ||
**[[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]], [[2xca]], [[2xcp]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[3t5h]], [[3t5j]], [[3t5k]], [[3t5l]], [[3v6h]], [[3v6j]], [[3v6k]], [[4gc6]], [[4gc7]], [[4juz]], [[4jv0]], [[4jv1]], [[4jv2]], [[4qw8]], [[4qw9]], [[4qwa]], [[4qwb]], [[4qwc]], [[4qwd]], [[4qwe]], [[4ruc]], [[4rua]], [[4tqr]], [[4tqs]], [[5edw]], [[6vgm]] - SsPol IV + DNA + nucleotide<br /> | **[[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]], [[2xca]], [[2xcp]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[3t5h]], [[3t5j]], [[3t5k]], [[3t5l]], [[3v6h]], [[3v6j]], [[3v6k]], [[4gc6]], [[4gc7]], [[4juz]], [[4jv0]], [[4jv1]], [[4jv2]], [[4qw8]], [[4qw9]], [[4qwa]], [[4qwb]], [[4qwc]], [[4qwd]], [[4qwe]], [[4ruc]], [[4rua]], [[4tqr]], [[4tqs]], [[5edw]], [[6vg6]], [[6vgm]], [[[6vkp]], [6vnp]], [[7kle]], [[7klf]] - SsPol IV + DNA + nucleotide<br /> | ||
**[[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]] - SsPol IV (mutant) + DNA + nucleotide <br /> | **[[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]] - SsPol IV (mutant) + DNA + nucleotide <br /> | ||
**[[2xc9]], [[3m9m]], [[3m9n]], [[3m9o]], [[2v4q]], [[2v4r]], [[2ago]], [[1ryr]], [[1rys]], [[2w9a]], [[2w9b]], [[2w9c]], [[3gii]], [[3gij]], [[3gik]], [[3gil]], [[3gim]], [[3qz7]], [[3qz8]], [[3pvx]], [[3pw0]], [[3pw2]], [[3pw4]], [[3pw5]], [[3pw7]], [[3raq]], [[3rax]], [[3rb0]], [[3rb3]], [[3rb4]], [[3rb6]], [[3rbd]], [[3rbe]], [[4hyk]], [[4fbt]], [[4fbu]], [[4g3i]], [[4rzr]], [[6l84]], [[6l97]] - SsPol IV + DNA<br /> | |||
**[[2xc9]], [[3m9m]], [[3m9n]], [[3m9o]], [[2v4q]], [[2v4r]], [[2ago]], [[1ryr]], [[1rys]], [[2w9a]], [[2w9b]], [[2w9c]], [[3gii]], [[3gij]], [[3gik]], [[3gil]], [[3gim]], [[3qz7]], [[3qz8]], [[3pvx]], [[3pw0]], [[3pw2]], [[3pw4]], [[3pw5]], [[3pw7]], [[3raq]], [[3rax]], [[3rb0]], [[3rb3]], [[3rb4]], [[3rb6]], [[3rbd]], [[3rbe]], [[4hyk]], [[4fbt]], [[4fbu]], [[4g3i]], [[4rzr]], [[6l84]], [[6l97]] | |||
**[[3fds]] – SsPol IV + PCNA B + PCNA C<br /> | **[[3fds]] – SsPol IV + PCNA B + PCNA C<br /> | ||
**[[3bq2]], [[3bq0]] – SaPol IV + DNA – | **[[3bq2]], [[3bq0]] – SaPol IV + DNA – Sulfolobus acidocaldarius<br /> | ||
**[[3bq1]], [[4f4w]], [[4f4x]], [[4f4y]], [[4f4z]], [[4f50]] - SaPol IV + DNA + nucleotide<br /> | **[[3bq1]], [[4f4w]], [[4f4x]], [[4f4y]], [[4f4z]], [[4f50]] - SaPol IV + DNA + nucleotide<br /> | ||
**[[4nlg]] - SaPol IV (mutant) + DNA<br /> | **[[4nlg]] - SaPol IV (mutant) + DNA<br /> | ||
| Line 180: | Line 198: | ||
**[[6jus]] - MsPol IV + DNA + nucleotide<br /> | **[[6jus]] - MsPol IV + DNA + nucleotide<br /> | ||
**[[6jur]] - MsPol IV (mutant) + DNA + nucleotide<br /> | **[[6jur]] - MsPol IV (mutant) + DNA + nucleotide<br /> | ||
*DNA polymerase V | |||
**[[8gmt]] - EcPol V subumit umud + RecA + DNA + nucleotide – Cryo EM<br /> | |||
*DNA polymerase from enterobacteria phage T7 | *DNA polymerase from enterobacteria phage T7 | ||
**[[1zyq]], [[1x9m]], [[1x9s]], [[1x9w]], [[1tk0]], [[1skr]], [[1sks]], [[1skw]], [[1sl0]], [[1sl1]], [[1sl2]], [[1t7p]], [[ | **[[2ajq]] – T7Dpo (mutant) + thioredoxin (mutant) + DNA <br /> | ||
**[[1zyq]], [[1x9m]], [[1x9s]], [[1x9w]], [[1tk0]], [[1skr]], [[1sks]], [[1skw]], [[1sl0]], [[1sl1]], [[1sl2]], [[1t7p]], [[6n7w]] - T7Dpo (mutant) + thioredoxin + DNA + nucleotide<br /> | |||
**[[1t8e]], [[1tk5]], [[1tk8]], [[1tkd]] - T7Dpo + thioredoxin + DNA + nucleotide<br /> | **[[1t8e]], [[1tk5]], [[1tk8]], [[1tkd]] - T7Dpo + thioredoxin + DNA + nucleotide<br /> | ||
**[[6p7e]] - T7Dpo + thioredoxin + DNA + nucleotide + peptide<br /> | |||
**[[6n9x]], [[6n9w]], [[6n9v]] - T7Dpo + Gp4 + DNA + nucleotide derivative<br /> | **[[6n9x]], [[6n9w]], [[6n9v]] - T7Dpo + Gp4 + DNA + nucleotide derivative<br /> | ||
**[[6n9u]] - T7Dpo + Gp4 + DNA + RNA + nucleotide derivative<br /> | **[[6n9u]] - T7Dpo + Gp4 + DNA + RNA + nucleotide derivative<br /> | ||
| Line 195: | Line 219: | ||
**[[5n2g]], [[5n2e]] – VvDpo – Vaccinia virus<br /> | **[[5n2g]], [[5n2e]] – VvDpo – Vaccinia virus<br /> | ||
**[[5n2h]] – VvDpo (mutant) <br /> | **[[5n2h]] – VvDpo (mutant) <br /> | ||
**[[5mdn]] – Dpo – | **[[5mdn]] – Dpo – Pyrobaculum calidifontis<br /> | ||
**[[1bgx]] – TaDpo + TP7 antibody<br /> | **[[1bgx]] – TaDpo + TP7 antibody<br /> | ||
**[[1ih7]] – EpDpo | **[[1ih7]] – EpDpo - Enterobacteria phage RB69<br /> | ||
**[[3cfo]], [[4i9l]] – EpDpo (mutant) <br /> | |||
**[[1waf]], [[1waj]] - EpDpo + nucleotide<br /> | **[[1waf]], [[1waj]] - EpDpo + nucleotide<br /> | ||
**[[3uiq]], [[4dtj]], [[4dtm]], [[4dtn]], [[4dto]], [[4dtp]], [[4dtr]], [[4dts]], [[4dtu]], [[4dtx]], [[4du1]], [[4du3]], [[4du4]] - EpDpo + DNA<br /> | **[[3uiq]], [[4dtj]], [[4dtm]], [[4dtn]], [[4dto]], [[4dtp]], [[4dtr]], [[4dts]], [[4dtu]], [[4dtx]], [[4du1]], [[4du3]], [[4du4]] - EpDpo + DNA<br /> | ||
**[[3nci]], [[3lds]], [[3l8b]], [[3cq8]], [[3cfp]], [[3cfr]], [[3kd1]], [[3kd5]], [[4e3s]] - EpDpo (mutant) + DNA <br /> | **[[3nci]], [[3lds]], [[3l8b]], [[3cq8]], [[3cfp]], [[3cfr]], [[3kd1]], [[3kd5]], [[4e3s]] - EpDpo (mutant) + DNA <br /> | ||
**[[3ndk]], [[3ne6]], [[3ngi]], [[3nhg]], [[3nae]], [[3lzj]], [[3lzi]], [[2ozs]], [[2p5g]], [[2dy4]], [[1q9x]], [[1q9y]], [[1ig9]], [[3qep]], [[3rma]], [[3rmb]], [[3rmc]], [[3rmd]], [[3rwu]], [[3s9h]], [[3scx]], [[3si6]], [[3sjj]], [[3snn]], [[3spy]], [[3spz]], [[3sq0]], [[3sq1]], [[3sq2]], [[3sq4]], [[3sun]], [[3suo]], [[3sup]], [[3suq]], [[3tab]], [[3tae]], [[3taf]], [[3tag]], [[4i9q]], [[4j2a]], [[4j2b]], [[4j2d]], [[4j2e]], [[4khn]], [[4khq]], [[4khs]], [[4khu]], [[4khw]], [[4khy]], [[4ki4]], [[4ki6]], [[4m3r]], [[4m3t]], [[4m3u]], [[4m3w]], [[4m3x]], [[4m3y]], [[4m3z]], [[4m41]], [[4m42]], [[4m45]], [[5gnq]] - EpDpo (mutant) + DNA + nucleotide<br /> | **[[3ndk]], [[3ne6]], [[3ngi]], [[3nhg]], [[3nae]], [[3lzj]], [[3lzi]], [[2ozs]], [[2p5g]], [[2dy4]], [[1q9x]], [[1q9y]], [[1ig9]], [[3qep]], [[3rma]], [[3rmb]], [[3rmc]], [[3rmd]], [[3rwu]], [[3s9h]], [[3scx]], [[3si6]], [[3sjj]], [[3snn]], [[3spy]], [[3spz]], [[3sq0]], [[3sq1]], [[3sq2]], [[3sq4]], [[3sun]], [[3suo]], [[3sup]], [[3suq]], [[3tab]], [[3tae]], [[3taf]], [[3tag]], [[4i9q]], [[4j2a]], [[4j2b]], [[4j2d]], [[4j2e]], [[4khn]], [[4khq]], [[4khs]], [[4khu]], [[4khw]], [[4khy]], [[4ki4]], [[4ki6]], [[4m3r]], [[4m3t]], [[4m3u]], [[4m3w]], [[4m3x]], [[4m3y]], [[4m3z]], [[4m41]], [[4m42]], [[4m45]], [[5gnq]] - EpDpo (mutant) + DNA + nucleotide<br /> | ||
**[[1clq]], [[3iuq]] - EpDpo + DNA + nucleotide<br /> | **[[1clq]], [[3iuq]], [[7f4y]] - EpDpo + DNA + nucleotide<br /> | ||
**[[2oyq]], [[2ozm]], [[2p5o]], [[2dtu]], [[3qei]], [[3qer]], [[3qes]], [[3qet]], [[3qev]], [[3qew]], [[3qex]], [[3qnn]], [[3qno]], [[4fj5]], [[4fj7]], [[4fj8]], [[4fj9]], [[4fjg]], [[4fjh]], [[4fji]], [[4fjj]], [[4fjk]], [[4fjl]], [[4fjm]], [[4fjn]], [[4fjx]], [[4fk0]], [[4fk2]], [[4fk4]] - EpDpo (mutant) + DNA + nucleotide analog<br /> | **[[2oyq]], [[2ozm]], [[2p5o]], [[2dtu]], [[3qei]], [[3qer]], [[3qes]], [[3qet]], [[3qev]], [[3qew]], [[3qex]], [[3qnn]], [[3qno]], [[4fj5]], [[4fj7]], [[4fj8]], [[4fj9]], [[4fjg]], [[4fjh]], [[4fji]], [[4fjj]], [[4fjk]], [[4fjl]], [[4fjm]], [[4fjn]], [[4fjx]], [[4fk0]], [[4fk2]], [[4fk4]] - EpDpo (mutant) + DNA + nucleotide analog<br /> | ||
**[[2atq]] – EpDpo + GP32<br /> | **[[2atq]] – EpDpo + GP32<br /> | ||
**[[1noy]] – T4Dpo + DNA | **[[1noy]] – T4Dpo + DNA <br /> | ||
**[[1noz]] – T4Dpo residues 1-388<br /> | **[[1noz]] – T4Dpo residues 1-388<br /> | ||
**[[2ex3]] – BpDpo (mutant) + DNA terminal protein – Bacillus phage 29<br /> | **[[2ex3]] – BpDpo (mutant) + DNA terminal protein – Bacillus phage 29<br /> | ||
| Line 211: | Line 236: | ||
**[[2pyj]], [[2pyl]] - BpDpo (mutant) + DNA + nucleotide<br /> | **[[2pyj]], [[2pyl]] - BpDpo (mutant) + DNA + nucleotide<br /> | ||
**[[1xhx]] - BpDpo (mutant) <br /> | **[[1xhx]] - BpDpo (mutant) <br /> | ||
**[[3a2f]] - PfDpo + PCNA - | **[[3a2f]] - PfDpo + PCNA - Pyrococcus furiosus<br /> | ||
**[[2jgu]], [[4ahc]] – PfDpo<br /> | **[[2jgu]], [[4ahc]] – PfDpo<br /> | ||
**[[4ail]] – PfDpo + DNA<br /> | **[[4ail]] – PfDpo + DNA<br /> | ||
**[[1tgo]] - TgDpo – | **[[1tgo]], [[7b06]], [[7b07]], [[7b08]] - TgDpo – Thermococcus gorgonarius<br /> | ||
**[[2vwk]] - TgDpo (mutant) <br /> | **[[2vwk]] - TgDpo (mutant) <br /> | ||
**[[7b0h]] – TgDpo + DNA <br /> | **[[7b0h]] – TgDpo + DNA <br /> | ||
**[[2vwj]], [[2xhb]] – TgDpo (mutant) + DNA <br /> | **[[2vwj]], [[2xhb]] – TgDpo (mutant) + DNA <br /> | ||
**[[7b0f]], [[7b0g]] - TgDpo + DNA + nucleotide<br /> | |||
**[[1wn7]], [[1wns]], [[5vu5]] – TkDpo B <br /> | **[[1wn7]], [[1wns]], [[5vu5]] – TkDpo B <br /> | ||
**[[5vu9]], [[5vu8]], [[5vu7]], [[5vu6]], [[5omf]] - TkDpo + DNA<br /> | **[[5vu9]], [[5vu8]], [[5vu7]], [[5vu6]], [[5omf]] - TkDpo + DNA<br /> | ||
**[[4k8z]] - TkDpo (mutant) + DNA<br /> | **[[4k8z]] - TkDpo (mutant) + DNA<br /> | ||
**[[6q4t]] - TkDpo (mutant) + DNA + nucleotide derivative<br /> | **[[6q4t]] - TkDpo (mutant) + DNA + nucleotide derivative<br /> | ||
**[[1qht]] - ThDpo (mutant) – | **[[1qht]] - ThDpo (mutant) – Thermococcus<br /> | ||
**[[4k8x]], [[5omv]], [[5omq]], [[6is7]], [[6isf]], [[6isg]], [[6ish]], [[6isi]] - ThDpo (mutant) + DNA<br /> | **[[4k8x]], [[5omv]], [[5omq]], [[6is7]], [[6isf]], [[6isg]], [[6ish]], [[6isi]] - ThDpo (mutant) + DNA<br /> | ||
**[[4yfu]] - Dpo (mutant) + DNA - | **[[4yfu]] - Dpo (mutant) + DNA - Bacillus<br /> | ||
**[[1d5a]] – DeDpo <br /> | **[[1d5a]] – DeDpo <br /> | ||
*DNA polymerase | *DNA polymerase alpha | ||
**[[4e2i]] – hDpo α subunit β + large T antigen – human<br /> | **[[4e2i]] – hDpo α subunit β + large T antigen – human<br /> | ||
| Line 235: | Line 261: | ||
**[[4bpx]] - hDpo α catalytic subunit + DNA primase small subunit <br /> | **[[4bpx]] - hDpo α catalytic subunit + DNA primase small subunit <br /> | ||
**[[5exr]] - hDpo α catalytic+B subunits + DNA primase small+large subunits <br /> | **[[5exr]] - hDpo α catalytic+B subunits + DNA primase small+large subunits <br /> | ||
**[[7opl]] - hDpo α catalytic+B subunits + DNA primase small+large subunits + Nsp1 – Cryo EM<br /> | |||
**[[7u5c]], [[8d08]] - hDpo α catalytic+B subunits + DNA primase small+large subunits + CST + DNA – Cryo EM<br /> | |||
**[[4q5v]] - hDpo α catalytic subunit + DNA + RNA + aphidicolin <br /> | **[[4q5v]] - hDpo α catalytic subunit + DNA + RNA + aphidicolin <br /> | ||
**[[4qcl]] - hDpo α catalytic subunit + DNA + RNA + nucleotide <br /> | **[[4qcl]], [[7n2m]] - hDpo α catalytic subunit + DNA + RNA + nucleotide <br /> | ||
**[[2keb]] - hDpo | **[[2keb]] - hDpo B - NMR <br /> | ||
**[[1n5g]], [[1k0p]], [[1k18]] - hDpo | **[[1n5g]], [[1k0p]], [[1k18]] - hDpo zinc finger domain – NMR<br /> | ||
**[[7uy7]], [[7uy8l]] - Dpo α B subunit + DNA primase small+large subunits – Tetrahymena thermophile - Cryo EM<br /> | |||
*DNA polymerase | *DNA polymerase beta | ||
**[[4ppx]] - hDpo | **[[4ppx]] - hDpo + spiroiminohydantoin + DNA<br /> | ||
**[[1zjm]], [[1tv9]], [[1tva]], [[1bpx]], [[1bpz]], [[1zqa]], [[1zqb]], [[1zqc]], [[1zqd]], [[1zqf]], [[1zqg]], [[1zqh]], [[1zqi]], [[1zaj]], [[1zqk]], [[1zql]], [[1zqm]], [[1zqn]], [[1zqo]], [[1zqp]], [[1zqq]], [[1zqr]], [[1zqs]], [[1zqt]], [[1zqu]], [[1zqv]], [[1zqw]], [[1zqx]], [[1zqy]], [[1zqz]], [[1zqe]], [[3q8p]], [[3q8q]], [[3lk9]], [[3mby]], [[3isb]], [[3isc]], [[3gdx]], [[3rh4]], [[3rh5]], [[3rh6]], [[4gxi]], [[4gxj]], [[4gxk]], [[4kld]], [[4kle]], [[4klf]], [[4klg]], [[4klh]], [[4kli]], [[4klj]], [[4kll]], [[4klm]], [[4klo]], [[4klp]], [[4klq]], [[4kls]], [[4klt]], [[4klu]], [[1zqj]], [[4lvs]], [[4m2y]], [[4m47]], [[4nlk]], [[4nln]], [[4nlz]], [[4nm1]], [[4nm2]], [[4pgy]], [[4tup]], [[4tuq]], [[4tur]], [[4tus]], [[5wo0]], [[5wnz]], [[5wny]], [[5wnx]], [[5vs4]], [[5vs3]], [[5vs2]], [[5vs1]], [[5vs0]], [[5vrz]], [[5vry]], [[5vrx]], [[5vrw]], [[5vez]], [[5v1r]], [[5v1p]], [[5v1o]], [[5v1n]], [[5v1j]], [[5v1i]], [[5v1h]], [[5v1g]], [[5v1f]], [[5ugp]], [[5ugo]], [[5ugn]], [[5u9h]], [[5u8i]], [[5u8h]], [[5u8g]], [[5u2t]], [[5u2s]], [[5u2r]], [[5tzv]], [[5tbc]], [[5tbb]], [[5tba]], [[5tb9]], [[5tb8]], [[5j2k]], [[5j2j]], [[5j2i]], [[5j2h]], [[5j2g]], [[5j2f]], [[5j2e]], [[5j2d]], [[5j2c]], [[5j2b]], [[5j2a]], [[5j29]], [[5j0y]], [[5j0x]], [[5j0w]], [[5j0u]], [[5j0t]], [[5j0s]], [[5j0r]], [[5j0q]], [[5j0p]], [[5j0o]], [[5dbc]], [[5dbb]], [[5dba]], [[5db9]], [[5db8]], [[5db7]], [[5db6]], [[6g2q]], [[6ph5]], [[7ice]], [[7icf]], [[7ici]], [[7icj]], [[7icl]], [[7icm]], [[7icp]], [[7icr]], [[7ict]], [[7icg]], [[7ich]], [[7icj]], [[7ick]], [[7icm]], [[7icn]], [[7ico]], [[7icp]], [[7icq]], [[7icr]], [[7ics]], [[7ict]], [[7icu]], [[7icv]], [[7k97]], [[8icb]], [[8icc]], [[9icj]], [[9ick]], [[9icl]], [[9icm]], [[9icp]], [[9icw]], [[9icx]], [[9icy]] - hDpo | **[[1zjm]], [[1tv9]], [[1tva]], [[1bpx]], [[1bpz]], [[1zqa]], [[1zqb]], [[1zqc]], [[1zqd]], [[1zqf]], [[1zqg]], [[1zqh]], [[1zqi]], [[1zaj]], [[1zqk]], [[1zql]], [[1zqm]], [[1zqn]], [[1zqo]], [[1zqp]], [[1zqq]], [[1zqr]], [[1zqs]], [[1zqt]], [[1zqu]], [[1zqv]], [[1zqw]], [[1zqx]], [[1zqy]], [[1zqz]], [[1zqe]], [[3q8p]], [[3q8q]], [[3lk9]], [[3mby]], [[3isb]], [[3isc]], [[3gdx]], [[3rh4]], [[3rh5]], [[3rh6]], [[4gxi]], [[4gxj]], [[4gxk]], [[4kld]], [[4kle]], [[4klf]], [[4klg]], [[4klh]], [[4kli]], [[4klj]], [[4kll]], [[4klm]], [[4klo]], [[4klp]], [[4klq]], [[4kls]], [[4klt]], [[4klu]], [[1zqj]], [[4lvs]], [[4m2y]], [[4m47]], [[4nlk]], [[4nln]], [[4nlz]], [[4nm1]], [[4nm2]], [[4pgy]], [[4tup]], [[4tuq]], [[4tur]], [[4tus]], [[5wo0]], [[5wnz]], [[5wny]], [[5wnx]], [[5vs4]], [[5vs3]], [[5vs2]], [[5vs1]], [[5vs0]], [[5vrz]], [[5vry]], [[5vrx]], [[5vrw]], [[5vez]], [[5v1r]], [[5v1p]], [[5v1o]], [[5v1n]], [[5v1j]], [[5v1i]], [[5v1h]], [[5v1g]], [[5v1f]], [[5ugp]], [[5ugo]], [[5ugn]], [[5u9h]], [[5u8i]], [[5u8h]], [[5u8g]], [[5u2t]], [[5u2s]], [[5u2r]], [[5tzv]], [[5tbc]], [[5tbb]], [[5tba]], [[5tb9]], [[5tb8]], [[5j2k]], [[5j2j]], [[5j2i]], [[5j2h]], [[5j2g]], [[5j2f]], [[5j2e]], [[5j2d]], [[5j2c]], [[5j2b]], [[5j2a]], [[5j29]], [[5j0y]], [[5j0x]], [[5j0w]], [[5j0u]], [[5j0t]], [[5j0s]], [[5j0r]], [[5j0q]], [[5j0p]], [[5j0o]], [[5dbc]], [[5dbb]], [[5dba]], [[5db9]], [[5db8]], [[5db7]], [[5db6]], [[6g2q]], [[6ph5]], [[7ice]], [[7icf]], [[7ici]], [[7icj]], [[7icl]], [[7icm]], [[7icp]], [[7icr]], [[7ict]], [[7icg]], [[7ich]], [[7icj]], [[7ick]], [[7icm]], [[7icn]], [[7ico]], [[7icp]], [[7icq]], [[7icr]], [[7ics]], [[7ict]], [[7icu]], [[7icv]], [[7k97]], [[8icb]], [[8icc]], [[9icj]], [[9ick]], [[9icl]], [[9icm]], [[9icp]], [[9icw]], [[9icx]], [[9icy]] - hDpo + DNA<br /> | ||
**[[1bpy]], [[1mq2]], [[1mq3]], [[ | **[[1bpy]], [[1mq2]], [[1mq3]], [[1zjn1]], [[2pxi]], [[2iso]], [[2isp]], [[2i9g]], [[2fmp]], [[2fmq]], [[2fms]], [[3jpn]], [[3jpo]], [[3jpp]], [[3jpq]], [[3jpr]], [[3jpt]], [[3jps]], [[3isd]], [[3c2k]], [[3c2l]], [[3c2m]], [[3rje]], [[3rjf]], [[3rjg]], [[3rjh]], [[3rji]], [[3rjj]], [[3rjk]], [[3tfr]], [[3tfs]], [[4do9]], [[4doa]], [[4dob]], [[4doc]], [[4mf2]], [[4mf8]], [[4mfa]], [[4mfc]], [[4mff]], [[4nxz]], [[4ny8]], [[4o5c]], [[4o5e]], [[4o5k]], [[4o9m]], [[4p2h]], [[4pgq]], [[4pgx]], [[4pha]], [[4phd]], [[4uaw]], [[4uay]], [[4uaz]], [[4ub1]], [[4ub2]], [[4ub3]], [[4ub4]], [[4ub5]], [[4ubb]], [[4ubc]], [[4z6f]], [[4z6e]], [[4z6d]], [[4z6c]], [[4yn4]], [[4ymo]], [[4ymn]], [[4ymm]], [[4rt3]], [[4rt2]], [[4rq8]], [[4rq7]], [[4rq6]], [[4rq5]], [[4rq4]], [[4rq3]], [[4rq2]], [[4rq1]], [[4rq0]], [[4rpz]], [[4rpy]], [[4rpx]], [[4php]], [[4phe]], [[4ph5]], [[5eoz]], [[5bpc]], [[5bom]], [[5bol]], [[7mz0]], [[7mz1]], [[7mz2]], [[7mz3]], [[7mz4]], [[7mzb]], [[7rbe]], [[7rbf]], [[7rbg]], [[7rbh]], [[7rbi]], [[7rbj]], [[7rbk]], [[7rbl]], [[7rbm]], [[7rbn]], [[7rbo]], [[7s9j]], [[7s9k]], [[7s9l]], [[7s9m]], [[7s9n]], [[7s9o]], [[7a9p]], [[7s9q]], [[8ica]], [[8ice]], [[8icf]], [[8icg]], [[8ich]], [[8ici]], [[8icj]], [[8ick]], [[8icl]], [[8icm]], [[8icn]], [[8ico]], [[8icp]], [[8icq]], [[8icr]], [[8ics]], [[8ict]], [[8icu]], [[8icv]], [[8icw]], [[8icx]], [[8icy]], [[8icz]], [[9ica]], [[9icb]], [[9icc]], [[9ice]], [[9icf]], [[9icg]], [[9ich]], [[9ici]], [[9icn]], [[9ico]] [[9icq]], [[9icr]], [[9ics]], [[9ict]], [[9icu]], [[9icv]] - hDpo + DNA + nucleotide<br /> | ||
**[[2p66]], [[4f5n]], [[6n2t]], [[6n2s]], [[6n2r]], [[6mr8]], [[6mr7]], [[6e3x]], [[6e3w]], [[6e3v]], [[6e3r]], [[6dia]], [[6cub]], [[6cua]], [[6cu9]], [[6ctx]], [[6ctw]], [[6ctv]], [[6ctu]], [[6ctt]], [[6ctr]], | |||
[[6ctq]], [[6ctp]], [[6cto]], [[6ctn]], [[6ctm]], [[6ctl]], [[6ctk]], [[6ctj]], [[6cti]], [[6crh]], [[6crc]], [[6crb]], [[6cr9]], [[6cr8]], [[6cr7]], [[6cr6]], [[6cr5]], [[6cr4]], [[6cr3]], [[6cpq]], [[6cly]], [[6bem]], [[6bel]], [[6ph6]], [[6u2o]], [[6u6b]], [[6uok]], [[6uol]], [[6uom]], [[6w2m]], [[7k96]] - hDpo + DNA + nucleotide analog<br /> | |||
**[[ | **[[4f5o]], [[4f5p]], [[4f5q]], [[4f5r]], [[6dic]], [[6btf]], [[6bte]], [[6nkr]], [[6nks]], [[6nkt]], [[6nku]], [[6nkv]], [[6nkw]], [[6nkx]], [[6nky]], [[6nkz]], [[6nl0]], [[6pkz]] - hDpo (mutant) + DNA + nucleotide analog<br /> | ||
**[[ | **[[3ogu]], [[4jwm]], [[4jwn]], [[4m9g]], [[4m9h]], [[4m9j]], [[4m9l]], [[4m9n]], [[4r63]], [[4r64]], [[4r65]], [[4r66]] - hDpo (mutant) + DNA<br /> | ||
**[[ | **[[5hhi]], [[5hhh]] - hDpo + DNA + azanide derivative<br /> | ||
**[[2v6z]] - hDpo N-terminal (mutant)]] - NMR<br /> | |||
**[[ | **[[3k75]], [[3lqc]] - hDpo + DNA repair protein XRCC1<br /> | ||
**[[ | **[[1rpl]], [[2bpc]], [[1bpe]], [[1bpb]], [[1bpd]], [[3uxn]] - rDpo – rat<br /> | ||
**[[ | **[[2van]], [[1jn3]], [[3uxo]], [[3v7l]]- rDpo (mutant) <br /> | ||
**[[ | **[[1dk2]], [[1dk3]], [[1bno]], [[1bnp]] - rDpo N-terminal – NMR<br /> | ||
**[[ | **[[1nom]] - rDpo C-terminal<br /> | ||
**[[1huo]], [[1huz]], [[3v7j]] - rDpo + DNA<br /> | |||
**[[3uxp]], [[3v72]], [[3v7k]] - rDpo (mutant) + DNA <br /> | |||
**[[1bpe]] - rDpo + nucleotide<br /> | |||
**[[3au2]] – TtDpo β + GTP – | **[[2bpf]], [[2bpg]] - rDpo + DNA + nucleotide<br /> | ||
**[[8e10]] - mDpo <br /> | |||
**[[8e11]] - mDpo (mutant)<br /> | |||
**[[3au2]] – TtDpo β + GTP – Thermus thermophilus<br /> | |||
**[[3b0x]], [[3b0y]] – TtDpo β (mutant) + GTP<br /> | **[[3b0x]], [[3b0y]] – TtDpo β (mutant) + GTP<br /> | ||
**[[3au6]], [[3auo]] – TtDpo β + GTP + DNA<br /> | **[[3au6]], [[3auo]] – TtDpo β + GTP + DNA<br /> | ||
**[[4p4m]], [[4p4o]], [[4p4p]] - Dpo | **[[4p4m]], [[4p4o]], [[4p4p]] - Dpo + DNA + nucleotide – Leishmania infantum<br /> | ||
*DNA polymerase beta-like protein | |||
**[[5hrb]], [[5hrd]], [[5hre]], [[7cpw]] - AsfvDpo + DNA – African swine fever virus<br /> | |||
**[[5hr9]], [[5hrg]] - AsfvDpo (mutant) + DNA <br /> | |||
**[[1jaj]] - AsfvDpo - NMR <br /> | |||
**[[5hrf]], [[5hri]], [[5hrl]] - AsfvDpo + DNA + nucleotide<br /> | |||
**[[5hrh]], [[5hrk]] - AsfvDpo (mutant) + DNA + nucleotide<br /> | |||
*DNA polymerase | *DNA polymerase gamma | ||
**[[3ikm]] - hDpo | **[[3ikm]] - hDpo 1+2 <br /> | ||
**[[3ikl]], [[2g4c]] - hDpo | **[[3ikl]], [[2g4c]] - hDpo 2<br /> | ||
**[[2jw5]] - hDpo | **[[2jw5]] - hDpo BRCT domain<br /> | ||
**[[1xsl]] - hDpo | **[[1xsl]] - hDpo catalytic domain<br /> | ||
**[[1nzp]] - hDpo | **[[1nzp]] - hDpo lyase domain - NMR<br /> | ||
**[[3pmn]], [[3pnc]], [[3mda]], [[2gws]], [[2bcq]], [[2bcr]], [[2bcs]], [[2bcu]], [[2bcv]], [[1xsp]], [[1rzt]] - hDpo | **[[3pmn]], [[3pnc]], [[3mda]], [[2gws]], [[2bcq]], [[2bcr]], [[2bcs]], [[2bcu]], [[2bcv]], [[1xsp]], [[1rzt]] - hDpo + DNA<br /> | ||
**[[3mgh]], [[3c5f]], [[3c5g]], [[2pfn]] - hDpo | **[[3mgh]], [[3c5f]], [[3c5g]], [[2pfn]] - hDpo (mutant) + DNA<br /> | ||
**[[3pml]], [[3mdc]], [[1xsn]] - hDpo | **[[3pml]], [[3mdc]], [[1xsn]] - hDpo + DNA + nucleotide<br /> | ||
**[[4k4g]], [[4k4h]], [[4k4i]] - hDpo | **[[5c53]], [[5c52]], [[5c51]] - hDpo + DNA + nucleotide + pyrimidine derivative<br /> | ||
**[[3mgi]], [[3hw8]], [[3hwt]], [[3hx0]], [[2pfo]], [[2pfp]], [[2pfq]] - hDpo | **[[4ztz]], [[4ztu]] - hDpo + DNA + nucleotide <br /> | ||
**[[4k4g]], [[4k4h]], [[4k4i]] - hDpo + DNA + nucleotide analog<br /> | |||
**[[3mgi]], [[3hw8]], [[3hwt]], [[3hx0]], [[2pfo]], [[2pfp]], [[2pfq]] - hDpo (mutant) + DNA + nucleotide<br /> | |||
*DNA polymerase | *DNA polymerase delta | ||
**[[3e0j]] - hDpo | **[[3e0j]] - hDpo 2+3<br /> | ||
**[[3upq]], [[3uq0]], [[3uq2]] - hDpo δ (mutant) + DNA<br /> | **[[3upq]], [[3uq0]], [[3uq2]] - hDpo δ (mutant) + DNA<br /> | ||
**[[4fo6]] - hDpo δ (mutant) + DNA + nucleotide analog<br /> | **[[4fo6]] - hDpo δ (mutant) + DNA + nucleotide analog<br /> | ||
| Line 286: | Line 328: | ||
**[[7kc0]] - hDpo δ + PCNA + POL31 + POL32 +DNA + nucleotide analog – Cryo EM<br /> | **[[7kc0]] - hDpo δ + PCNA + POL31 + POL32 +DNA + nucleotide analog – Cryo EM<br /> | ||
*DNA polymerase | *DNA polymerase epsilon | ||
**[[5vbn]] - hDpo | **[[5vbn]] - hDpo subunits A+2 <br /> | ||
*DNA polymerase | *DNA polymerase zeta | ||
**[[3abd]], [[3abe]] - hDpo | **[[3abd]], [[3abe]] - hDpo catalytic subunit Rev3 + mitotic spindle assembly checkpoint protein Rev7<br /> | ||
**[[6ekm]], [[6bi7]], [[6bcd]], [[6bc8]] - hDpo | **[[6ekm]], [[6bi7]], [[6bcd]], [[6bc8]] - hDpo catalytic subunit + MAD2B<br /> | ||
**[[3vu7]], [[4gk0]], [[6ws0]] - hDpo | **[[3vu7]], [[4gk0]], [[6ws0]] - hDpo catalytic subunit + DNA repair protein Rev1 + MAD2B<br /> | ||
**[[6ws5]] - hDpo | **[[6ws5]] - hDpo catalytic subunit + DNA repair protein Rev1 + MAD2B + inhibitor<br /> | ||
**[[4fjo]], [[4gk5]] - hDpo | **[[4fjo]], [[4gk5]] - hDpo + hDpo catalytic subunit + DNA repair protein Rev1 + MAD2B<br /> | ||
**[[6v8p]] - hDpo | **[[6v8p]] - hDpo catalytic subunit + hDpo d subunits 3+small – Cryo EM<br /> | ||
**[[6v93]] - hDpo | **[[6v93]] - hDpo catalytic+processivity subunits + hDpo d subunits 3+small + DNA + dCTP – Cryo EM<br /> | ||
*DNA polymerase | *DNA polymerase eta | ||
**[[2i5o]] - hDpo | **[[2i5o]] - hDpo ubiquitin-binding zinc finger – NMR<br /> | ||
**[[6mp3]] - hDpo | **[[3wup]] - hDpo ubiquitin-binding zinc finger <br /> | ||
**[[4dl2]], [[4dl3]], [[4dl4]], [[4dl5]], [[4dl6]], [[4dl7]], [[4eey]], [[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]], [[4o3n]], [[4o3o]], [[4o3p]], [[4o3q]], [[4o3r]], [[4o3s]], [[4q8e]], [[4q8f]], [[4rnm]], [[4rnn]], [[4rno | **[[3tq1]], [[4j9k]], [[4j9l]], [[4j9m]], [[4j9n]], [[4j9o]], [[4j9p]], [[4j9q]], [[4j9r]], [[4j9s]], [[6mp3]] - hDpo + DNA <br /> | ||
**[[6pz3]], [[6q02]] - hDpo | **[[3jaa]], [[4dl2]], [[4dl3]], [[4dl4]], [[4dl5]], [[4dl6]], [[4dl7]], [[4eey]], [[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]], [[4o3n]], [[4o3o]], [[4o3p]], [[4o3q]], [[4o3r]], [[4o3s]], [[4q8e]], [[4q8f]], [[4rnm]], [[4rnn]], [[4rno]], [[3si8]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]], [[5l9x]], [[5l1l]], [[5l1k]], [[5l1j]], [[5l1i]], [[5kg7]], [[5kg6]], [[5kg5]], [[5kg4]], [[5kg3]], [[5kg2]], [[5kg1]], [[5kg0]], [[5kfz]], [[5kfy]], [[5kfx]], [[5kfw]], [[5kfv]], [[5kfu]], [[5kft]], [[5kfs]], [[5kfr]], [[5kfq]], [[5kfp]], [[5kfo]], [[5kfn]], [[5kfm]], [[5kfl]], [[5kfk]], [[5kfj]], [[5kfi]], [[5kfh]], [[5kfg]], [[5kff]], [[5kfe]], [[5kfd]], [[5kfc]], [[5kfb]], [[5kfa]], [[5jum]], [[5f9n]], [[5f9l]], [[5ewg]], [[5ewf]], [[5ewe]], [[5dqi]], [[5dqh]], [[5dqg]], [[5dlg]], [[5dlf]], [[5dgb]], [[5dga]], [[5dg9]], [[5dg8]], [[5dg7]], [[4yr3]], [[4yr2]], [[4yr0]], [[4yqw]], [[4yp3]], [[4ru9]], [[6mxo]], [[6m7v]], [[6m7u]], [[6m7t]], [[6m7p]], [[6m7o]], [[6d0z]], [[6d0m]], [[6mq8]], [[6pl7]], [[6pl8]], [[6plc]], [[6ui2]], [[6uqi]], [[6v5k]], [[6w5x]], [[6wk6]], [[7l69]], [[7lcd]], [[7m7l]], [[7m7m]], [[7m7n]], [[7m7o]], [[7m7p]], [[7m7q]], [[7m7r]], [[7m7s]], [[7m7t]], [[7m7u]], [[7m7y]], [[7m7z]], [[7m80]], [[7m81]], [[7m82]], [[7m83]], [[7m84]], [[7m85]], [[7m86]], [[7m87]], [[7m88]], [[7m89]], [[7m8a]], [[7m8b]], [[7m8c]], [[7m8d]], [[7u72]], [[7u73]], [[7u74]], [[7u75]], [[7u76]], [[7u77]], [[7u78]], [[7u79]], [[7u7a]], [[7u7b]], [[7u7c]], [[7u7d]], [[7u7e]], [[7u7g]], [[7u7f]], [[7u7i]], [[7u7j]], [[7u7k]], [[7u7l]], [[7u7r]], [[7u7s]], [[7u7t]], [[7u7u]], [[7u7v]], [[7u7w]], [[7u7x]], [[7u7y]], [[7u7z]], [[7u80]], [[7u81]], [[7u82]], [[7u83]], [[7u84]], [[8e85]], [[8e86]], [[8e87]], [[8e88], [[8e89]], [[8e8a]], [[8e8c]], [[8e8d]], [[8e8e]], [[8e8f]], [[8e8g], [[8e8h]], [[8e8j]], [[8e8k]] - hDpo + DNA + nucleotide<br /> | ||
**[[5aga]] - hDpo | **[[6pz3]], [[6q02]] - hDpo (mutant) + DNA + nucleotide<br /> | ||
**[[5aga]] - hDpo + nucleotide<br /> | |||
*DNA polymerase | *DNA polymerase iota | ||
**[[3q8r]], [[3q8s]], [[3h4b]], [[3h4d]], [[3gv5]], [[3gv7]], [[3gv8]], [[3epg]], [[3epi]], [[2fll]], [[2fln]], [[2flp]], [[2dpi]], [[2dpj]], [[2alz]], [[1zet]], [[1t3n]], [[4ebc]], [[4ebd]], [[4ebe]], [[4fs1]], [[4fs2]], [[4eyh]], [[4eyi]], [[3g6v]], [[3g6x]], [[3g6y]], [[5ulx]], [[5ulw]], [[5kt7]], [[5kt6]], [[5kt5]], [[5kt4]], [[5kt3]], [[5kt2]] - hDpo | **[[3q8r]], [[3q8s]], [[3h4b]], [[3h4d]], [[3gv5]], [[3gv7]], [[3gv8]], [[3epg]], [[3epi]], [[2fll]], [[2fln]], [[2flp]], [[2dpi]], [[2dpj]], [[2alz]], [[1zet]], [[1t3n]], [[4ebc]], [[4ebd]], [[4ebe]], [[4fs1]], [[4fs2]], [[4eyh]], [[4eyi]], [[3g6v]], [[3g6x]], [[3g6y]], [[5ulx]], [[5ulw]], [[5kt7]], [[5kt6]], [[5kt5]], [[5kt4]], [[5kt3]], [[5kt2]] - hDpo + DNA + nucleotide<br /> | ||
**[[3ngd]], [[3osn]], [[3h40 | **[[3ngd]], [[3osn]], [[3h40]] - hDpo catalytic fragment + DNA <br /> | ||
**[[2ktf]] - hDpo | **[[2ktf]] - hDpo + ubiquitin<br /> | ||
**[[2l0f]], [[2l0g]] - | **[[2l0f]], [[2l0g]] - hDpo + ubiquitin – NMR<br /> | ||
**[[2khu]] - | **[[2khu]] - hDpo ubiquitin binding motif – NMR<br /> | ||
**[[2khw]] - | **[[2khw]] - hDpo ubiquitin binding motif + ubiquitin – NMR<br /> | ||
**[[2kwu]], [[2kwv]] - mDpo | **[[2kwu]], [[2kwv]] - mDpo C-terminal + ubiquitin - NMR<br /> | ||
**[[3ai4]] - mDpo | **[[3ai4]] - mDpo /yEGFP<br /> | ||
*DNA polymerase | *DNA polymerase kappa | ||
**[[1t94]] - hDpo | **[[1t94]] - hDpo <br /> | ||
**[[3in5]] - hDpo | **[[3in5]], [[5w2c]], [[5w2a]], [[5t14]] - hDpo + DNA<br /> | ||
**[[2w7o]], [[2w7p]], [[2oh2]], [[3pzp]], [[6cst]], [[6bs1]], [[6brx]], [[5w2a]], [[5w2c]] - hDpo | **[[2w7o]], [[2w7p]], [[2oh2]], [[3pzp]], [[4u6p]], [[6cst]], [[6bs1]], [[6brx]], [[5w2a]], [[5w2c]] - hDpo + DNA + nucleotide<br /> | ||
**[[7nv0]], [[7nv1]] - hDpo + PCNA + DNA + nucleotide<br /> | |||
**[[4u7c]], [[4y6p]] - hDpo + DNA + benzopyrene derivative<br /> | |||
**[[2lsi]] - hDpo peptide + hRev1<br /> | |||
**[[2lsk]] - mDpo + DNA repair protein Rev1<br /> | |||
*DNA polymerase | *DNA polymerase lambda | ||
**[[5cb1]] – hDpo <br /> | **[[5cb1]] – hDpo <br /> | ||
**[[5iio]], [[5iin]], [[5iim]], [[5iil]], [[5iik]], [[5iij]], [[5iii]], [[5ddm]] – hDpo + DNA<br /> | **[[5iio]], [[5iin]], [[5iim]], [[5iil]], [[5iik]], [[5iij]], [[5iii]], [[5ddm]] – hDpo + DNA<br /> | ||
**[[5cp2]] – hDpo (mutant) + DNA<br /> | **[[5cp2]] – hDpo (mutant) + DNA<br /> | ||
**[[5dkw]], [[5ca7]], [[4xus]], [[4xrh]], [[4xq8]], [[4xa5]], [[4x5v]] – hDpo + DNA + nucleotide<br /> | **[[5dkw]], [[5ca7]], [[4xus]], [[4xrh]], [[4xq8]], [[4xa5]], [[4x5v]], [[7m07]], [[7m08]], [[7m09]], [[7m0a]], [[7m0b]], [[7m0c]], [[7m0d]], [[7m0e]] – hDpo + DNA + nucleotide<br /> | ||
**[[5cwr]], [[5cr0]], [[5cj7]], [[5chg]] – hDpo (mutant) + DNA + nucleotide<br /> | **[[5cwr]], [[5cr0]], [[5cj7]], [[5chg]], [[7m43]], [[7m44]], [[7m45]], [[7m46]], [[7m47]], [[7m48]], [[7m49]], [[7m4a]], [[7m4b]], [[7m4c]], [[7m4d]], [[7m4e]], [[7m4f]], [[7m4h]], [[7m4i]], [[7m4j]], [[7m4k]], [[7m4l]] – hDpo (mutant) + DNA + nucleotide<br /> | ||
**[[5ddy]] – hDpo + nucleotide<br /> | **[[5ddy]] – hDpo + nucleotide<br /> | ||
*DNA polymerase | *DNA polymerase mu or DNA-directed DNA/RNA polymerase | ||
**[[2htf]], [[2dun]] - hDpo | **[[2htf]], [[2dun]] - hDpo BRCT domain residues 24-143 – NMR<br /> | ||
**[[5tyx]], [[5tyw]], [[5tyv]], [[5tyu]], [[5tyg]], [[5tyf]], [[5tye]], [[5tyd]], [[5tyc]], [[5tyb]], [[5txz]], [[5txx]], [[5tws]], [[5twr]], [[5twq]], [[5twp]] - hDpo residues 132-494 + DNA <br /> | **[[4lzd]] - hDpo residues 132-494 <br /> | ||
**[[4yd2]], [[4ycx]] - hDpo | **[[4lzg]], [[5tyz]], [[5tyy]], [[5tyx]], [[5tyw]], [[5tyv]], [[5tyu]], [[5tyg]], [[5tyf]], [[5tye]], [[5tyd]], [[5tyc]], [[5tyb]], [[5txz]], [[5txx]], [[5tws]], [[5twr]], [[5twq]], [[5twp]], [[5zlc]] - hDpo residues 132-494 + DNA <br /> | ||
**[[6ak5]] - hDpo | **[[4yd2]], [[4ycx]] - hDpo residues 132-494 (mutant) + DNA <br /> | ||
**[[6ipn]], [[6ipm]], [[6ipl]], [[6ipk]], [[6ipj]], [[6ipi]], [[6iph]], [[6aec]], [[6aeh]], [[6ak6]] - hDpo | **[[6ak5]] - hDpo residues 132-397+411-494 + nucleotide derivative<br /> | ||
**[[7coa]] - hDpo | **[[6ipn]], [[6ipm]], [[6ipl]], [[6ipk]], [[6ipj]], [[6ipi]], [[6iph]], [[6aec]], [[6aeh]], [[6ak6]] - hDpo residues 132-397+411-494 (mutant) + nucleotide derivative<br /> | ||
**[[4yd1]], [[6ipg]], [[6ipf]], [[6ipe]], [[6ipd]], [[5vz7]], [[5vz8]], [[5vz9]], [[5vza]], [[5vzb]], [[5vzc]], [[5vzd]], [[5vze]], [[5vzf]], [[5vzg]], [[5vzh]], [[5vzi]], [[6ak8]], [[6ak9]], [[6akh]], [[6p1m]], [[6p1n]], [[6p1o]], [[6p1p]], [[6p1q]], [[6p1r]], [[6p1s]], [[6p1t]], [[6p1u]], [[6p1v]], [[6p1w]] - hDpo | **[[6vez]], [[6vf0]], [[6vf1]], [[6vf2]], [[6vf3]], [[6vf4]], [[6vf5]], [[6vf6]], [[6vf7]], [[6vf8]], [[6vf9]], [[6vfa]], [[6vfb]], [[6vfc]], [[7co6]], [[7co8]], [[7co9]], [[7coa]], [[7cob]], [[7cod]], [[7kss]], [[7kst]], [[7ksu]], [[7ksv]], [[7ksw]], [[7ksx]], [[7ksy]], [[7ksz]], [[7kt0]], [[7kt1]], [[7kt2]], [[7kt3]], [[7kt4]], [[7kt5]], [[7kt6]], [[7kt7]], [[7kt9]], [[7kta]], [[7ktb]], [[7ktc]], [[7ktd]], [[7kte]], [[7ktf]], [[7ktg]], [[7kth]], [[7kti]], [[7ktj]], [[7ktk]], [[7ktl]], [[7ktm]], [[7ktn]] - hDpo + DNA + nucleotide derivative<br /> | ||
**[[2ihm]] - mDpo | **[[4m04]], [[4m0a]], [[4yd1]], [[6ipg]], [[6ipf]], [[6ipe]], [[6ipd]], [[5vz7]], [[5vz8]], [[5vz9]], [[5vza]], [[5vzb]], [[5vzc]], [[5vzd]], [[5vze]], [[5vzf]], [[5vzg]], [[5vzh]], [[5vzi]], [[6ak8]], [[6ak9]], [[6akh]], [[6p1m]], [[6p1n]], [[6p1o]], [[6p1p]], [[6p1q]], [[6p1r]], [[6p1s]], [[6p1t]], [[6p1u]], [[6p1v]], [[6p1w]], [[7coc]] - hDpo residues 132-494+411-494 (mutant) + DNA + nucleotide derivative<br /> | ||
**[[2ihm]] - mDpo catalytic domain + DNA – mouse<br /> | |||
*DNA polymerase | *DNA polymerase nu | ||
**[[4xvi]], [[4xvk]], [[4xvl]], [[4xvm]] – hDpo | **[[4xvi]], [[4xvk]], [[4xvl]], [[4xvm]] – hDpo nu catalytic domain + DNA<br /> | ||
*DNA polymerase | *DNA polymerase chi or repair DNA polymerase chi | ||
**[[2m2t]] – AsfvDpo X – African swine fever virus – NMR<br /> | **[[2m2t]] – AsfvDpo X – African swine fever virus – NMR<br /> | ||
| Line 357: | Line 405: | ||
**[[2w9m]] – DrDpo X | **[[2w9m]] – DrDpo X | ||
*DNA polymerase | *DNA polymerase theta | ||
**[[5a9j]] – hDpo helicase domain 1-894<br /> | **[[5a9j]] – hDpo helicase domain 1-894<br /> | ||
**[[5a9f]], [[5aga]] – hDpo helicase domain + nucleotide<br /> | **[[5a9f]], [[5aga]] – hDpo helicase domain + nucleotide<br /> | ||
**[[4x0p]], [[4x0q]] – hDpo helicase domain + nucleotide + DNA<br /> | **[[4x0p]], [[4x0q]] – hDpo helicase domain + nucleotide + DNA<br /> | ||
**[[6xbu]] – hDpo polymerase domain 1819-2590 + nucleotide + DNA<br /> | **[[6xbu]], [[7zus]] – hDpo polymerase domain 1819-2590 + nucleotide + DNA<br /> | ||
**[[7zx0]], [[7zx1]], [[8e23]], [[8e24]] – hDpo polymerase domain + inhibitor + DNA<br /> | |||
**[[8ef9]], [[8efc]], [[8efk]] – Dpo polymerase domain + nucleotide + DNA – Lates calcarifer<br /> | |||
*DNA polymerase from yeast | *DNA polymerase from yeast | ||
**[[3oiq]] - yDpo | **[[3oiq]] - yDpo + cell division control protein 13 <br /> | ||
**[[3flo]], [[3lgb]] - yDpo | **[[3flo]], [[3lgb]] - yDpo subunits A,B<br /> | ||
**[[4b08]], [[4fvm]] - yDpo | **[[4b08]], [[4fvm]] - yDpo subunit A<br /> | ||
**[[4fxd]], [[4fyd]] - yDpo | **[[4fxd]], [[4fyd]] - yDpo subunit A + RNA + DNA<br /> | ||
**[[5oki]] - yDpo | **[[5oki]] - yDpo subunit A + DCC1 + chromosome fidelity protein<br /> | ||
**[[3iay]] - yDpo | **[[3iay]] - yDpo catalytic subunit + DNA<br /> | ||
**[[6p1h]] - yDpo | **[[6p1h]] - yDpo catalytic+small+3 subunits + DNA + nucleotide – Cryo EM<br /> | ||
**[[6wjv]] - yDpo II | **[[6wjv]] - yDpo II – Cryo EM<br /> | ||
**[[6hv8]] - yDpo II | **[[6hv8]] - yDpo II subunit A+B – Cryo EM<br /> | ||
**[[3oha]], [[3ohb]], [[3mfh]] - yDpo | **[[3oha]], [[3ohb]], [[3mfh]] - yDpo (mutant) + DNA<br /> | ||
**[[6i8a]], [[6qib]] - yDpo II | **[[6i8a]], [[6qib]], [[7r3x]], [[7r3y]] - yDpo II subunit A + DNA + nucleotide <br /> | ||
**[[6g0a]], [[6fwk]], [[3mfi]], [[4m8o]] - yDpo II | **[[6g0a]], [[6fwk]], [[3mfi]], [[4m8o]] - yDpo II subunit A (mutant) + DNA + nucleotide derivative<br /> | ||
**[[6s1c]], [[6s2e]], [[6s2f]] - yDpo II | **[[6s1c]], [[6s2e]], [[6s2f]] - yDpo II subunit A (mutant) + DCC1 + chromosome transmission fidelity proteins<br /> | ||
**[[6hv9]] - yDpo II subunit A+B + CMG + DNA + nucleotide – Cryo EM<br /> | |||
**[[2r8j]], [[2r8k]], [[4ptf]] - yDpo catalytic domain + DNA + nucleotide <br /> | |||
**[[6hv9]] - yDpo II | **[[6h1v]] - yDpo catalytic domain (mutant) + DNA + nucleotide <br /> | ||
**[[2r8j]], [[2r8k]], [[4ptf]] - yDpo | **[[2xgp]], [[2xgq]], [[2wtf]] - yDpo + DNA<br /> | ||
**[[6h1v]] - yDpo | **[[7lxd]] - yDpo catalytic+processivity subunits + hDpo d subunits 3+small – Cryo EM<br /> | ||
**[[2xgp]], [[2xgq]], [[2wtf]] - yDpo | **[[7s0t]] - yDpo catalytic+processivity subunits + hDpo d subunits 3+small + DNA – Cryo EM<br /> | ||
**[[7lxd]] - yDpo | **[[5y27]], [[5y26]] - Dpo subunit D + transcription factor – fission yeast<br /> | ||
**[[5y27]], [[5y26]] - Dpo | **[[1jih]], [[5vtp]] – yDpo catalytic domain<br /> | ||
**[[1jih]], [[5vtp]] – yDpo | |||
*DNA polymerase Rev1; Domains – BRCT 44-133; catalytic 330-833; UBM2 998-1040; C-terminal 1158-1251 | *DNA polymerase Rev1; Domains – BRCT 44-133; catalytic 330-833; UBM2 998-1040; C-terminal 1158-1251 | ||
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**[[5vzm]] – hRev1 UBM2 domain + ubiquitin - NMR<br /> | **[[5vzm]] – hRev1 UBM2 domain + ubiquitin - NMR<br /> | ||
**[[2lsg]], [[2lsy]] – hRev1 C-terminal domain – NMR<br /> | **[[2lsg]], [[2lsy]] – hRev1 C-terminal domain – NMR<br /> | ||
**[[2n1g]] – hRev1 C-terminal domain + Dpo | **[[2n1g]] – hRev1 C-terminal domain + Dpo d subunit 3 – NMR<br /> | ||
**[[2lsi]] – hRev1 C-terminal domain + hDpo | **[[2lsi]] – hRev1 C-terminal domain + hDpo peptide <br /> | ||
**[[2lsk]] – hRev1 C-terminal domain + hDpo | **[[2lsk]] – hRev1 C-terminal domain + hDpo peptide <br /> | ||
**[[4ext]] – hRev1 C-terminal domain + hDpo | **[[4ext]] – hRev1 C-terminal domain + hDpo catalytic subunit peptide + MAD2B<br /> | ||
**[[4gk5]] – hRev1 C-terminal domain + hDpo | **[[4gk5]] – hRev1 C-terminal domain + hDpo peptide + hDpo catalytic subunit peptide + MAD2B<br /> | ||
**[[2lsj]] – mRev1 C-terminal domain + mDpo | **[[2lsj]] – mRev1 C-terminal domain + mDpo peptide <br /> | ||
**[[4fjo]] – mRev1 C-terminal domain + mDpo | **[[4fjo]] – mRev1 C-terminal domain + mDpo peptide + MAD2B<br /> | ||
**[[4id3]], [[5umv]] – yRev1 BRCT domain <br /> | **[[4id3]], [[5umv]] – yRev1 BRCT domain <br /> | ||
**[[2m2i]], [[5vx7]] – yRev1 BRCT domain – NMR<br /> | **[[2m2i]], [[5vx7]] – yRev1 BRCT domain – NMR<br /> | ||
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**[[3bjy]], [[2aq4]], [[3osp]], [[5wm1]], [[5wm8]], [[5wmb]], [[6x6z]], [[6x71]], [[6x75]], [[6x77]] – yRev1 catalytic domain + DNA + nucleotide<br /> | **[[3bjy]], [[2aq4]], [[3osp]], [[5wm1]], [[5wm8]], [[5wmb]], [[6x6z]], [[6x71]], [[6x75]], [[6x77]] – yRev1 catalytic domain + DNA + nucleotide<br /> | ||
Terminal deoxynucleotidyl transferase | |||
**[[2coe]] – TdT BRCT domain – NMR<br /> | **[[2coe]] – TdT BRCT domain – NMR<br /> | ||
**[[1jms]] – mTdT catalytic domain + Mg <br / > | **[[1jms]] – mTdT catalytic domain + Mg <br / > | ||
Terminal deoxynucleotidyl transferase binary complex | |||
**[[4iqt]], [[4iqu]], [[4iqv]], [[4iqw]] – mTdT catalytic domain + inhibitor <br / > | **[[4iqt]], [[4iqu]], [[4iqv]], [[4iqw]] – mTdT catalytic domain + inhibitor <br / > | ||
| Line 426: | Line 475: | ||
**[[4i2a]] – mTdT catalytic domain + UMP derivative + Mg <br / > | **[[4i2a]] – mTdT catalytic domain + UMP derivative + Mg <br / > | ||
Terminal deoxynucleotidyl transferase ternary complex with DNA | |||
**[[4i2e]] – mTdT catalytic domain + AMPCPP + Co + DNA <br / > | **[[4i2e]] – mTdT catalytic domain + AMPCPP + Co + DNA <br / > | ||