4qif: Difference between revisions

Revision as of 11:31, 15 February 2023

Crystal Structure of PduA with edge mutation K26A and pore mutation S40H

Structural highlights

4qif is a 9 chain structure with sequence from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:	GOL, K, PGO, SO4, TAR
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

PDUA_SALTY

Publication Abstract from PubMed

Bacterial microcompartments are widespread prokaryotic organelles that have important and diverse roles ranging from carbon fixation to enteric pathogenesis. Current models for microcompartment function propose that their outer protein shell is selectively permeable to small molecules, but whether a protein shell can mediate selective permeability and how this occurs are unresolved questions. Here, biochemical and physiological studies of structure-guided mutants are used to show that the hexameric PduA shell protein of the 1,2-propanediol utilization (Pdu) microcompartment forms a selectively permeable pore tailored for the influx of 1,2-propanediol (the substrate of the Pdu microcompartment) while restricting the efflux of propionaldehyde, a toxic intermediate of 1,2-propanediol catabolism. Crystal structures of various PduA mutants provide a foundation for interpreting the observed biochemical and phenotypic data in terms of molecular diffusion across the shell. Overall, these studies provide a basis for understanding a class of selectively permeable channels formed by nonmembrane proteins.

Selective molecular transport through the protein shell of a bacterial microcompartment organelle.,Chowdhury C, Chun S, Pang A, Sawaya MR, Sinha S, Yeates TO, Bobik TA Proc Natl Acad Sci U S A. 2015 Feb 23. pii: 201423672. PMID:25713376^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Chowdhury C, Chun S, Pang A, Sawaya MR, Sinha S, Yeates TO, Bobik TA. Selective molecular transport through the protein shell of a bacterial microcompartment organelle. Proc Natl Acad Sci U S A. 2015 Feb 23. pii: 201423672. PMID:25713376 doi:https://dx.doi.org/10.1073/pnas.1423672112

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OCA

[1] Chowdhury C, Chun S, Pang A, Sawaya MR, Sinha S, Yeates TO, Bobik TA. Selective molecular transport through the protein shell of a bacterial microcompartment organelle. Proc Natl Acad Sci U S A. 2015 Feb 23. pii: 201423672. PMID:25713376 doi:https://dx.doi.org/10.1073/pnas.1423672112

[1]

@@ Line 3: / Line 3: @@
 <StructureSection load='4qif' size='340' side='right'caption='[[4qif]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4qif]] is a 9 chain structure with sequence from [http://en.wikipedia.org/wiki/Salty Salty]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QIF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4QIF FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4qif]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QIF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4QIF FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TAR:D(-)-TARTARIC+ACID'>TAR</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TAR:D(-)-TARTARIC+ACID'>TAR</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ngk|3ngk]], [[4ppd|4ppd]], [[4p2s|4p2s]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4qif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qif OCA], [https://pdbe.org/4qif PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4qif RCSB], [https://www.ebi.ac.uk/pdbsum/4qif PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4qif ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pduA, STM2038 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=99287 SALTY])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qif OCA], [http://pdbe.org/4qif PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4qif RCSB], [http://www.ebi.ac.uk/pdbsum/4qif PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4qif ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/PDUA_SALTY PDUA_SALTY]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 23: / Line 23: @@
 </StructureSection>
 [[Category: Large Structures]]
-[[Category: Salty]]
+[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
-[[Category: Pang, A H]]
+[[Category: Pang AH]]
-[[Category: Sawaya, M R]]
+[[Category: Sawaya MR]]
-[[Category: Yeates, T O]]
+[[Category: Yeates TO]]
-[[Category: 1-2 propanediol]]
-[[Category: Bmc domain]]
-[[Category: Glycerol]]
-[[Category: Potassium]]
-[[Category: Structural protein]]
-[[Category: Sulfate ion]]
-[[Category: Tartaric acid]]

4qif: Difference between revisions

Revision as of 11:31, 15 February 2023

Crystal Structure of PduA with edge mutation K26A and pore mutation S40H

Structural highlights

Function

Publication Abstract from PubMed

References

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