Galactosidase 3D structures: Difference between revisions

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Line 39: Line 39:
**[[4nxs]] - hAgal + jirimycin derivative<br />
**[[4nxs]] - hAgal + jirimycin derivative<br />
**[[6ibk]], [[6ibm]], [[6ibr]], [[6ibt]] - hAgal A + trisaccharide + cyclosulfamidate<br />
**[[6ibk]], [[6ibm]], [[6ibr]], [[6ibt]] - hAgal A + trisaccharide + cyclosulfamidate<br />
**[[7exq]], [[7exr]] - Agal + saccharide – ''Arabidopsis thaliana''<br />
**[[1t0o]] – HjAgal + galactose<br />  
**[[1t0o]] – HjAgal + galactose<br />  
**[[2xn2]] - LaAgal + galactose<br />
**[[2xn2]] - LaAgal + galactose<br />
Line 58: Line 59:
**[[5iaz]] - rBgal C-terminal - NMR<br />
**[[5iaz]] - rBgal C-terminal - NMR<br />
**[[3og2]] – TrBgal – ''Trichoderma reesei''<br />
**[[3og2]] – TrBgal – ''Trichoderma reesei''<br />
**[[1hn1]], [[1dp0]], [[1f4a]], [[1f4h]], [[4v41]], [[4v40]], [[4ttg]], [[6drv]] - EcBgal - Escherichia coli<br />
**[[1hn1]], [[1dp0]], [[1f4a]], [[1f4h]], [[4v41]], [[4v40]], [[4ttg]], [[6drv]] - EcBgal - ''Escherichia coli''<br />
**[[3muy]], [[3i3e]], [[3iap]], [[3iaq]], [[3dym]], [[3dyp]], [[1px3]], [[3sep]], [[3t0a]], [[3t2o]], [[3vd3]], [[3vd5]], [[3vda]], [[4duv]] – EcBgal (mutant)<br />
**[[3j7h]], [[6cvm]], [[6drv]], [[6x1q]] – EcBgal – cryo EM<br />
**[[3j7h]], [[6cvm]], [[6drv]], [[6x1q]] – EcBgal – cryo EM<br />
**[[3dec]], [[3d3a]], [[3bga]], [[5mt2]], [[5mui]], [[5muj]] – BtBgal<br />
**[[3dec]], [[3d3a]], [[3bga]], [[5mt2]], [[5mui]], [[5muj]], [[6euf]], [[6euj]] – BtBgal<br />
**[[6etz]], [[6h1p]], [[6zjv]] - ArBgal – ''Arthrobacter''<br />
**[[6etz]], [[6h1p]], [[6zjv]] - ArBgal – ''Arthrobacter''<br />
**[[1yq2]], [[6se8]], [[6zjp]] - ArBgal (mutant)<br />
**[[1yq2]], [[6se8]], [[6zjp]] - ArBgal (mutant)<br />
Line 71: Line 73:
**[[4ha3]], [[4ha4]] – Bgal – ''Acidilobus saccharovorans''<br />
**[[4ha3]], [[4ha4]] – Bgal – ''Acidilobus saccharovorans''<br />
**[[3wq8]], [[6jow]] – Bgal – ''Pyrococcus furiosus''<br />
**[[3wq8]], [[6jow]] – Bgal – ''Pyrococcus furiosus''<br />
**[[4cu6]] – SpBgal catalytic module residues 137-985– ''Streptococcus pneumoniae''<br />
**[[4cu6]], [[4cu8]] – SpBgal catalytic module residues 137-985– ''Streptococcus pneumoniae''<br />
**[[4cu9]] – SpBgal carbohydrate-binding module II residues 1822-1998 <br />
**[[4cu9]] – SpBgal carbohydrate-binding module II residues 1822-1998 <br />
**[[4cua]] – SpBgal carbohydrate-binding module I residues 1463-1645 <br />
**[[4cua]] – SpBgal carbohydrate-binding module I residues 1463-1645 <br />
Line 78: Line 80:
**[[5vym]] - Bgal – ''Bifidobacterium adolescentis''<br />
**[[5vym]] - Bgal – ''Bifidobacterium adolescentis''<br />
**[[5nav]], [[5naq]] - Bgal – ''Lactobacillus plantarum''<br />
**[[5nav]], [[5naq]] - Bgal – ''Lactobacillus plantarum''<br />
**[[5yhs]] - BacBgal – ''Bacillus'' <br />
**[[3ob8]], [[3oba]] – Bgal – ''Kluyveromyces lactis''<br />
**[[3ob8]], [[3oba]] – Bgal – ''Kluyveromyces lactis''<br />
**[[5dfa]] - GsBgal (mutant) <br />
**[[5dfa]] - GsBgal (mutant) <br />
**[[5dmy]], [[6quc]] - BbBgal – ''Bifidobacterium bifidum''<br />
**[[5dmy]], [[6quc], [[7nit]]] - BbBgal – ''Bifidobacterium bifidum''<br />
**[[5e9a]] - Bgal - ''Rahnella''<br />
**[[5e9a]] - Bgal - ''Rahnella''<br />
**[[5euv]] - ParBgal - ''Paracoccus''<br />
**[[5euv]] - ParBgal - ''Paracoccus''<br />
**[[5ifp]] - Bgal – ''Aspergillus niger''<br />
**[[5ifp]] - AnBgal – ''Aspergillus niger''<br />
**[[6mvh]] - Bgal – ''Roseburia hominis''<br />
**[[6mvh]] - Bgal – ''Roseburia hominis''<br />
**[[6hpd]] - Bgal – ''Formosa agariphila''<br />
**[[6hpd]] - Bgal – ''Formosa agariphila''<br />
Line 90: Line 93:
**[[6u7i]] - FpBgal – ''Faecaibavterium prausnitzii''<br />
**[[6u7i]] - FpBgal – ''Faecaibavterium prausnitzii''<br />
**[[6u7j]] - Bgal – ''Clostridium''<br />
**[[6u7j]] - Bgal – ''Clostridium''<br />
**[[6m4e]] - Bgal – ''Hamamotoa singularis''<br />
**[[6ld6]] - BdBgal – ''Bifidobacterium dentium''<br />
**[[6ld6]] - BdBgal – ''Bifidobacterium dentium''<br />
**[[6ec6]], [[6jz1]] - RgBgal – ''Ruminococcus gnavus''<br />
**[[6ec6]], [[6jz1]] - RgBgal – ''Ruminococcus gnavus''<br />
**[[7kmn]] - XcBgal – ''Xanthomonas citri'' <br />
**[[7kmn]] - XcBgal – ''Xanthomonas citri'' <br />
**[[4d1i]] - CjBgal – ''Cellvibrio japonicus''<br />
**[[7f1n]] - Bgal - ''Thermofilum''<br />
**[[7sf2]] - Bgal – ''Bacterioides cellulosilyticus''<br />


*''β-Galactosidase binary complex with galactose''
*''β-Galactosidase binary complex with galactose''
Line 106: Line 113:
**[[4iug]] - Bgal + galactose – ''Aspergillus oryzae''<br />
**[[4iug]] - Bgal + galactose – ''Aspergillus oryzae''<br />
**[[3tty]] - BcBgal + galactose<br />
**[[3tty]] - BcBgal + galactose<br />
**[[4cub]] – SpBgal carbohydrate-binding module I + galactose <br />
**[[4cub]], [[4e8c]], [[4e8d]] – SpBgal carbohydrate-binding module I + galactose <br />
**[[4cuc]] – SpBgal catalytic module (mutant) + galactose <br />
**[[4cuc]] – SpBgal catalytic module (mutant) + galactose <br />
**[[4uni]] - BaBgal + galactose <br />
**[[4uni]] - BaBgal + galactose <br />
Line 116: Line 123:
**[[6sed]] - ArBgal + galactose <br />
**[[6sed]] - ArBgal + galactose <br />
**[[6zjq]], [[6zjs]], [[6zjw]] - ArBgal (mutant) + galactose <br />
**[[6zjq]], [[6zjs]], [[6zjw]] - ArBgal (mutant) + galactose <br />
**[[6zju]] - ArBgal (mutant) + saccharose <br />
**[[5yif]] - BacBgal (mutant) + galactose <br />
**[[7kmo]] - XcBgal + galactose <br />
**[[7kmo]] - XcBgal + galactose <br />
**[[6eui]] - BtBgal + galactose<br />


*''β-Galactosidase other complexes''
*''β-Galactosidase other complexes''
Line 151: Line 161:
**[[6se9]], [[6sea]] - ArBgal (mutant) + lactose<br />
**[[6se9]], [[6sea]] - ArBgal (mutant) + lactose<br />
**[[6zjx]] - ArBgal (mutant) + saccharose<br />
**[[6zjx]] - ArBgal (mutant) + saccharose<br />
**[[6zjr]], [[6zjt]] - ArBgal (mutant) + lactulose<br />
**[[7cwd]] - BcBgal + disaccharide<br />
**[[7cwd]] - BcBgal + disaccharide<br />
**[[6ld0]], [[6ldb]], [[6ldc]], [[6ldd]] - BdBgal + Gauche drug<br />
**[[6ld0]], [[6ldb]], [[6ldc]], [[6ldd]] - BdBgal + Gauche drug<br />
**[[6jz2]], [[6jz6]], [[6jz7]] - RgBgal + Gauche drug <br />
**[[6jz2]], [[6jz6]], [[6jz7]] - RgBgal + Gauche drug <br />
**[[6jz4]], [[6jz8]] - RgBgal + glucaro lactone<br />
**[[6jz4]], [[6jz8]] - RgBgal + glucaro lactone<br />
**[[5mgc]], [[5mgd]] - RgBgal (mutant) + disaccharise <br />
**[[6jz3]] - RgBgal + drug <br />
**[[6jz3]] - RgBgal + drug <br />
**[[6jz4]] - RgBgal + glucuronic acid <br />
**[[6mvf]] - FpBgal + FMN <br />
**[[6mvf]] - FpBgal + FMN <br />
**[[6d4o]] - Bgal + glucuronic acid derivative – ''Lachnospira eligens''<br />
**[[6d4o]] - Bgal + glucuronic acid derivative – ''Lachnospira eligens''<br />
**[[6euh]] - BtBgal + drug <br />
**[[6euh]] - BtBgal + drug <br />
**[[6eug]] - BtBgal + galactoimidazole<br />
**[[7zvo]] - BtBgal + Ser + Ala <br />
**[[5jaw]], [[6tbf]], [[6tbg]], [[6tbh]], [[6tbi]], [[6tbj]], [[6tbk]] - CjBgal + inhibitor<br />
**[[4d1j]] - CjBgal + drug <br />
**[[5ift]], [[5ihr]], [[5juv]] - AnBgal (mutant) + saccharide<br />


*Endo-1,4-β-galactosidase
*Endo-1,4-β-galactosidase
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**[[2ygl]], [[2ygm]] – SpEbgal blood group A & B cleaving <br />
**[[2ygl]], [[2ygm]] – SpEbgal blood group A & B cleaving <br />
**[[4bf7]] – Ebgal – ''Emericella nidulans''<br />
**[[4bf7]] – Ebgal – ''Emericella nidulans''<br />
**[[7pmo]] – Rggal <br />
**[[7q1w]], [[7q20]] – Rggal (mutant) + polysaccharide<br />


*3,6-anhydro-α-L-galactosidase
*3,6-anhydro-α-L-galactosidase


**[[3p2n]], [[5opq]] – AAgal – ''Zobellia galactanivorans''<br />
**[[3p2n]], [[5opq]] – AAgal – ''Zobellia galactanivorans''<br />
**[[4ak5]] – BpAAgal – ''Bacterioides plebeius''<br />
**[[4ak5]], [[7ljj]] – BpAAgal – ''Bacterioides plebeius''<br />
**[[4ak6]] – BpAAgal (mutant)<br />
**[[4ak6]] – BpAAgal (mutant)<br />
**[[4ak7]] – BpAAgal (mutant) + polysaccharide<br />
**[[4ak7]], [[7lnp]] – BpAAgal (mutant) + polysaccharide<br />
**[[7lk7]] – BpAAgal + galactose<br />


*6-phospho-β-D-galactosidase
*6-phospho-β-D-galactosidase


**[[2pbg]], [[3pbg]], [[4pbg]], [[1pbg]] – Pgal (mutant) – ''Lactococcus lacti''<br />
**[[2pbg]], [[3pbg]], [[4pbg]], [[1pbg]] – Pgal (mutant) – ''Lactococcus lacti''<br />
**[[2v4v]] – gal GH59 – ''Clostridium cellulolyticum''
**[[2v4v]] – gal GH59 – ''Clostridium cellulolyticum''<br />
**[[4zep]] – GsPgal + phospho-glucose<br />
**[[7m1r]] – Pgal – ''Bacillus licheiformis''<br />
}}
}}


[[Category:Topic Page]]
[[Category:Topic Page]]
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