2rtx: Difference between revisions

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==Solution structure of the GGQ domain of YaeJ protein from Escherichia coli==

== Structural highlights ==

<table><tr><td colspan='2'>[[2rtx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Ecoli Ecoli~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RTX OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=2RTX FirstGlance].

<table><tr><td colspan='2'>[[2rtx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RTX OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=2RTX FirstGlance].

</td></tr><tr id='gene'><td class="sblockLbl">[[Gene|Gene:]]</td><td class="sblockDat">yaeJ, b0191, JW0187 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>

</td></tr><tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=2rtx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rtx OCA], [https://pdbe.org/2rtx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rtx RCSB], [https://www.ebi.ac.uk/pdbsum/2rtx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rtx ProSAT]</td></tr>

<tr id='activity'><td class="sblockLbl">Activity:</td><td class="sblockDat">[https://en.wikipedia.org/wiki/Aminoacyl-tRNA_hydrolase Aminoacyl-tRNA hydrolase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.29 3.1.1.29] </td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=2rtx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rtx OCA], [https://pdbe.org/2rtx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rtx RCSB], [https://www.ebi.ac.uk/pdbsum/2rtx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rtx ProSAT]</td></tr>

</table>

== Function ==

[[https://www.uniprot.org/uniprot/ARFB_ECOLI ARFB_ECOLI]] Rescues stalled ribosomes. Can hydrolyze peptidyl-tRNA on ribosomes stalled by both non-stop mRNAs and mRNAs that contain rare codon clusters. May function as a complementary rescue system when the stalled ribosome can not be rescued by the SsrA(tmRNA)-SmpB quality control system or the alternative ribosome-rescue factor A.<ref>PMID:21418110</ref> <ref>PMID:21051357</ref>

[https://www.uniprot.org/uniprot/ARFB_ECOLI ARFB_ECOLI] Rescues stalled ribosomes. Can hydrolyze peptidyl-tRNA on ribosomes stalled by both non-stop mRNAs and mRNAs that contain rare codon clusters. May function as a complementary rescue system when the stalled ribosome can not be rescued by the SsrA(tmRNA)-SmpB quality control system or the alternative ribosome-rescue factor A.<ref>PMID:21418110</ref> <ref>PMID:21051357</ref>

== Publication Abstract from PubMed ==

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__TOC__

</StructureSection>

[[Category: ~~Aminoacyl~~-~~tRNA hydrolase]]~~

[[Category: Escherichia coli K-12]]

~~[[Category: Ecoli~~]]

[[Category: Large Structures]]

[[Category: Enomoto, M]]

[[Category: Enomoto M]]

[[Category: Guntert, P]]

[[Category: Guntert P]]

[[Category: Kogure, H]]

[[Category: Kogure H]]

[[Category: Nameki, N]]

[[Category: Nameki N]]

[[Category: Tochio, N]]

[[Category: Tochio N]]

~~[[Category: Ggc domain]]~~

~~[[Category: Hydrolase~~]]

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@@ Line 1: / Line 1: @@
 ==Solution structure of the GGQ domain of YaeJ protein from Escherichia coli==
-<StructureSection load='2rtx' size='340' side='right'caption='[[2rtx]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='2rtx' size='340' side='right'caption='[[2rtx]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2rtx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecoli Ecoli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RTX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RTX FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2rtx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RTX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RTX FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">yaeJ, b0191, JW0187 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
+</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rtx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rtx OCA], [https://pdbe.org/2rtx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rtx RCSB], [https://www.ebi.ac.uk/pdbsum/2rtx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rtx ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Aminoacyl-tRNA_hydrolase Aminoacyl-tRNA hydrolase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.29 3.1.1.29] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rtx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rtx OCA], [https://pdbe.org/2rtx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rtx RCSB], [https://www.ebi.ac.uk/pdbsum/2rtx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rtx ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[https://www.uniprot.org/uniprot/ARFB_ECOLI ARFB_ECOLI]] Rescues stalled ribosomes. Can hydrolyze peptidyl-tRNA on ribosomes stalled by both non-stop mRNAs and mRNAs that contain rare codon clusters. May function as a complementary rescue system when the stalled ribosome can not be rescued by the SsrA(tmRNA)-SmpB quality control system or the alternative ribosome-rescue factor A.<ref>PMID:21418110</ref> <ref>PMID:21051357</ref>
+[https://www.uniprot.org/uniprot/ARFB_ECOLI ARFB_ECOLI] Rescues stalled ribosomes. Can hydrolyze peptidyl-tRNA on ribosomes stalled by both non-stop mRNAs and mRNAs that contain rare codon clusters. May function as a complementary rescue system when the stalled ribosome can not be rescued by the SsrA(tmRNA)-SmpB quality control system or the alternative ribosome-rescue factor A.<ref>PMID:21418110</ref> <ref>PMID:21051357</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 26: / Line 24: @@
 __TOC__
 </StructureSection>
-[[Category: Aminoacyl-tRNA hydrolase]]
+[[Category: Escherichia coli K-12]]
-[[Category: Ecoli]]
 [[Category: Large Structures]]
-[[Category: Enomoto, M]]
+[[Category: Enomoto M]]
-[[Category: Guntert, P]]
+[[Category: Guntert P]]
-[[Category: Kogure, H]]
+[[Category: Kogure H]]
-[[Category: Nameki, N]]
+[[Category: Nameki N]]
-[[Category: Tochio, N]]
+[[Category: Tochio N]]
-[[Category: Ggc domain]]
-[[Category: Hydrolase]]