4xdu: Difference between revisions

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<StructureSection load='4xdu' size='340' side='right'caption='[[4xdu]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
<StructureSection load='4xdu' size='340' side='right'caption='[[4xdu]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4xdu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Trepa Trepa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XDU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4XDU FirstGlance]. <br>
<table><tr><td colspan='2'>[[4xdu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Treponema_pallidum_subsp._pallidum_str._Nichols Treponema pallidum subsp. pallidum str. Nichols]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XDU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4XDU FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4xdu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xdu OCA], [https://pdbe.org/4xdu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4xdu RCSB], [https://www.ebi.ac.uk/pdbsum/4xdu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4xdu ProSAT]</span></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ifu|4ifu]]</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">apbE, TP_0796 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243276 TREPA])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/FAD:protein_FMN_transferase FAD:protein FMN transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.180 2.7.1.180] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xdu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xdu OCA], [http://pdbe.org/4xdu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4xdu RCSB], [http://www.ebi.ac.uk/pdbsum/4xdu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4xdu ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/APBE_TREPA APBE_TREPA]] Involved in the conversion of aminoimidazole ribotide (AIR), a purine intermediate, to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP) moiety of thiamine (By similarity).  
[https://www.uniprot.org/uniprot/APBE_TREPA APBE_TREPA] Involved in the conversion of aminoimidazole ribotide (AIR), a purine intermediate, to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP) moiety of thiamine (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: FAD:protein FMN transferase]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Trepa]]
[[Category: Treponema pallidum subsp. pallidum str. Nichols]]
[[Category: Brautigam, C A]]
[[Category: Brautigam CA]]
[[Category: Deka, R K]]
[[Category: Deka RK]]
[[Category: Norgard, M V]]
[[Category: Norgard MV]]
[[Category: Tomchick, D R]]
[[Category: Tomchick DR]]
[[Category: Bimetal center]]
[[Category: Fad pyrophosphatase]]
[[Category: Flavin turnover]]
[[Category: Fmn transferase]]
[[Category: Hydrolase]]
[[Category: Transferase]]
[[Category: Treponema pallidum]]
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