4xqe: Difference between revisions

Revision as of 17:47, 26 April 2023

Crystal Structure of the Homospermidine Synthase (HSS) variant H296S from Blastochloris viridis in Complex with NAD and Agmatine

Structural highlights

4xqe is a 2 chain structure with sequence from Blastochloris viridis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:	1PS, ACT, AG2, NAD, SO4
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

HSS_BLAVI

Publication Abstract from PubMed

The highly conserved bacterial homospermidine synthase (HSS) is a key enzyme of the polyamine metabolism of many proteobacteria including pathogenic strains such as Legionella pneumophila and Pseudomonas aeruginosa; The unique usage of NAD(H) as a prosthetic group is a common feature of bacterial HSS, eukaryotic HSS and deoxyhypusine synthase (DHS). The structure of the bacterial enzyme does not possess a lysine residue in the active center and thus does not form an enzyme-substrate Schiff base intermediate as observed for the DHS. In contrast to the DHS the active site is not formed by the interface of two subunits but resides within one subunit of the bacterial HSS. Crystal structures of Blastochloris viridis HSS (BvHSS) reveal two distinct substrate binding sites, one of which is highly specific for putrescine. BvHSS features a side pocket in the direct vicinity of the active site formed by conserved amino acids and a potential substrate discrimination, guiding, and sensing mechanism. The proposed reaction steps for the catalysis of BvHSS emphasize cation-pi interaction through a conserved Trp residue as a key stabilizer of high energetic transition states.

Comprehensive Structural Characterization of the Bacterial Homospermidine Synthase-an Essential Enzyme of the Polyamine Metabolism.,Krossa S, Faust A, Ober D, Scheidig AJ Sci Rep. 2016 Jan 18;6:19501. doi: 10.1038/srep19501. PMID:26776105^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Krossa S, Faust A, Ober D, Scheidig AJ. Comprehensive Structural Characterization of the Bacterial Homospermidine Synthase-an Essential Enzyme of the Polyamine Metabolism. Sci Rep. 2016 Jan 18;6:19501. doi: 10.1038/srep19501. PMID:26776105 doi:https://dx.doi.org/10.1038/srep19501

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OCA

[1] Krossa S, Faust A, Ober D, Scheidig AJ. Comprehensive Structural Characterization of the Bacterial Homospermidine Synthase-an Essential Enzyme of the Polyamine Metabolism. Sci Rep. 2016 Jan 18;6:19501. doi: 10.1038/srep19501. PMID:26776105 doi:https://dx.doi.org/10.1038/srep19501

[1]

@@ Line 1: / Line 1: @@
 ==Crystal Structure of the Homospermidine Synthase (HSS) variant H296S from Blastochloris viridis in Complex with NAD and Agmatine==
-<StructureSection load='4xqe' size='340' side='right' caption='[[4xqe]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
+<StructureSection load='4xqe' size='340' side='right'caption='[[4xqe]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4xqe]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_19567 Atcc 19567]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XQE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4XQE FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4xqe]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Blastochloris_viridis Blastochloris viridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XQE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4XQE FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PS:3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE'>1PS</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=AG2:AGMATINE'>AG2</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PS:3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE'>1PS</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=AG2:AGMATINE'>AG2</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4plp|4plp]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4xqe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xqe OCA], [https://pdbe.org/4xqe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4xqe RCSB], [https://www.ebi.ac.uk/pdbsum/4xqe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4xqe ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">hss ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1079 ATCC 19567])</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Homospermidine_synthase Homospermidine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.44 2.5.1.44] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xqe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xqe OCA], [http://pdbe.org/4xqe PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4xqe RCSB], [http://www.ebi.ac.uk/pdbsum/4xqe PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4xqe ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/HSS_BLAVI HSS_BLAVI]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 23: / Line 22: @@
 __TOC__
 </StructureSection>
-[[Category: Atcc 19567]]
+[[Category: Blastochloris viridis]]
-[[Category: Homospermidine synthase]]
+[[Category: Large Structures]]
-[[Category: Krossa, S]]
+[[Category: Krossa S]]
-[[Category: Oxidoreductase]]
-[[Category: Rossmann fold]]
-[[Category: Transferase]]

4xqe: Difference between revisions

Revision as of 17:47, 26 April 2023

Crystal Structure of the Homospermidine Synthase (HSS) variant H296S from Blastochloris viridis in Complex with NAD and Agmatine

Structural highlights

Function

Publication Abstract from PubMed

References

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