5ded: Difference between revisions

Line 3:

== Structural highlights ==

<table><tr><td colspan='2'>[[5ded]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DED OCA]. For a guided tour on the structure components use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5DED FirstGlance].

<table><tr><td colspan='2'>[[5ded]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_PY79 Bacillus subtilis PY79]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DED OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=5DED FirstGlance].

</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0O2:GUANOSINE+5-(TETRAHYDROGEN+TRIPHOSPHATE)+3-(TRIHYDROGEN+DIPHOSPHATE)'>0O2</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>

<tr id='activity'><td class="sblockLbl">Activity:</td><td class="sblockDat">[http://en.wikipedia.org/wiki/GTP_diphosphokinase GTP diphosphokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.6.5 2.7.6.5] </td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=5ded FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ded OCA], [https://pdbe.org/5ded PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ded RCSB], [https://www.ebi.ac.uk/pdbsum/5ded PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ded ProSAT]</td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[~~http~~://proteopedia.org/fgij/fg.htm?mol=5ded FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ded OCA], [~~http~~://pdbe.org/5ded PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5ded RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5ded PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5ded ProSAT]</td></tr>

</table>

== Function ==

[~~[http~~://www.uniprot.org/uniprot/YJBM_BACSU YJBM_BACSU]] Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a minor role in stringent response.<ref>PMID:18067544</ref>

[https://www.uniprot.org/uniprot/YJBM_BACSU YJBM_BACSU] Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a minor role in stringent response.<ref>PMID:18067544</ref>

== Publication Abstract from PubMed ==

Line 23:

Line 22:

__TOC__

</StructureSection>

[[Category: ~~GTP diphosphokinase~~]]

[[Category: Bacillus subtilis PY79]]

[[Category: Large Structures]]

[[Category: Altegoer, F]]

[[Category: Altegoer F]]

[[Category: Bange, G]]

[[Category: Bange G]]

[[Category: Schuhmacher~~, J S~~]]

[[Category: Schuhmacher JS]]

[[Category: Steinchen, W]]

[[Category: Steinchen W]]

~~[[Category: Alarmone]]~~

~~[[Category: Allosteric regulator]]~~

~~[[Category: Stringent response]]~~

~~[[Category: Transferase~~]]

Navigation menu

Page actions

Page actions

Personal tools

Navigation

Search

Tools

@@ Line 3: / Line 3: @@
 <StructureSection load='5ded' size='340' side='right'caption='[[5ded]], [[Resolution|resolution]] 2.94&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5ded]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DED OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5DED FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5ded]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_PY79 Bacillus subtilis PY79]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DED OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DED FirstGlance]. <br>
 </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0O2:GUANOSINE+5-(TETRAHYDROGEN+TRIPHOSPHATE)+3-(TRIHYDROGEN+DIPHOSPHATE)'>0O2</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/GTP_diphosphokinase GTP diphosphokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.6.5 2.7.6.5] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ded FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ded OCA], [https://pdbe.org/5ded PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ded RCSB], [https://www.ebi.ac.uk/pdbsum/5ded PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ded ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5ded FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ded OCA], [http://pdbe.org/5ded PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ded RCSB], [http://www.ebi.ac.uk/pdbsum/5ded PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ded ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/YJBM_BACSU YJBM_BACSU]] Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a minor role in stringent response.<ref>PMID:18067544</ref>
+[https://www.uniprot.org/uniprot/YJBM_BACSU YJBM_BACSU] Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a minor role in stringent response.<ref>PMID:18067544</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 23: / Line 22: @@
 __TOC__
 </StructureSection>
-[[Category: GTP diphosphokinase]]
+[[Category: Bacillus subtilis PY79]]
 [[Category: Large Structures]]
-[[Category: Altegoer, F]]
+[[Category: Altegoer F]]
-[[Category: Bange, G]]
+[[Category: Bange G]]
-[[Category: Schuhmacher, J S]]
+[[Category: Schuhmacher JS]]
-[[Category: Steinchen, W]]
+[[Category: Steinchen W]]
-[[Category: Alarmone]]
-[[Category: Allosteric regulator]]
-[[Category: Stringent response]]
-[[Category: Transferase]]