5fjw: Difference between revisions

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==Yeast delta-COP-I mu-homology domain complexed with Dsl1 WxWx(MSE) peptide==
==Yeast delta-COP-I mu-homology domain complexed with Dsl1 WxWx(MSE) peptide==
<StructureSection load='5fjw' size='340' side='right' caption='[[5fjw]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
<StructureSection load='5fjw' size='340' side='right'caption='[[5fjw]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5fjw]] is a 16 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FJW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FJW FirstGlance]. <br>
<table><tr><td colspan='2'>[[5fjw]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FJW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FJW FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5fjx|5fjx]], [[5fjz|5fjz]], [[5fk0|5fk0]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RET2, YFR051C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fjw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fjw OCA], [https://pdbe.org/5fjw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fjw RCSB], [https://www.ebi.ac.uk/pdbsum/5fjw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fjw ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fjw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fjw OCA], [http://pdbe.org/5fjw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fjw RCSB], [http://www.ebi.ac.uk/pdbsum/5fjw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fjw ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/COPD_YEAST COPD_YEAST]] The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). [[http://www.uniprot.org/uniprot/DSL1_YEAST DSL1_YEAST]] Required for protein transport between the Golgi and the endoplasmic reticulum. May tether coatomer-coated retrograde transport vesicles to the ER membrane through interaction with coatomer as well as the SNARE complex. May contribute to the stabilization of the SNARE complex.<ref>PMID:11260526</ref> <ref>PMID:11493604</ref> <ref>PMID:11739780</ref> 
[https://www.uniprot.org/uniprot/COPD_YEAST COPD_YEAST] The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Atcc 18824]]
[[Category: Large Structures]]
[[Category: Evans, P R]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Owen, D J]]
[[Category: Evans PR]]
[[Category: Suckling, R J]]
[[Category: Owen DJ]]
[[Category: Cop-i]]
[[Category: Suckling RJ]]
[[Category: Protein transport]]
[[Category: Vesicle coat protein]]
Retrieved from "https://proteopedia.org/5fjw"