2b2w: Difference between revisions

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<StructureSection load='2b2w' size='340' side='right'caption='[[2b2w]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='2b2w' size='340' side='right'caption='[[2b2w]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2b2w]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B2W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2B2W FirstGlance]. <br>
<table><tr><td colspan='2'>[[2b2w]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B2W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2B2W FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=M3L:N-TRIMETHYLLYSINE'>M3L</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1kna|1kna]], [[1kne|1kne]], [[1q3l|1q3l]], [[1pdq|1pdq]], [[2b2t|2b2t]], [[2b2u|2b2u]], [[2b2v|2b2v]], [[2b2y|2b2y]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=M3L:N-TRIMETHYLLYSINE'>M3L</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CHD1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2b2w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b2w OCA], [https://pdbe.org/2b2w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2b2w RCSB], [https://www.ebi.ac.uk/pdbsum/2b2w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2b2w ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2b2w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b2w OCA], [https://pdbe.org/2b2w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2b2w RCSB], [https://www.ebi.ac.uk/pdbsum/2b2w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2b2w ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/CHD1_HUMAN CHD1_HUMAN]] ATP-dependent chromatin-remodeling factor which functions as substrate recognition component of the transcription regulatory histone acetylation (HAT) complex SAGA. Regulates polymerase II transcription. Also required for efficient transcription by RNA polymerase I, and more specifically the polymerase I transcription termination step. Regulates negatively DNA replication. Not only involved in transcription-related chromatin-remodeling, but also required to maintain a specific chromatin configuration across the genome. Is also associated with histone deacetylase (HDAC) activity (By similarity). Required for the bridging of SNF2, the FACT complex, the PAF complex as well as the U2 snRNP complex to H3K4me3. Functions to modulate the efficiency of pre-mRNA splicing in part through physical bridging of spliceosomal components to H3K4me3. Required for maintaining open chromatin and pluripotency in embryonic stem cells.<ref>PMID:18042460</ref>
[https://www.uniprot.org/uniprot/CHD1_HUMAN CHD1_HUMAN] ATP-dependent chromatin-remodeling factor which functions as substrate recognition component of the transcription regulatory histone acetylation (HAT) complex SAGA. Regulates polymerase II transcription. Also required for efficient transcription by RNA polymerase I, and more specifically the polymerase I transcription termination step. Regulates negatively DNA replication. Not only involved in transcription-related chromatin-remodeling, but also required to maintain a specific chromatin configuration across the genome. Is also associated with histone deacetylase (HDAC) activity (By similarity). Required for the bridging of SNF2, the FACT complex, the PAF complex as well as the U2 snRNP complex to H3K4me3. Functions to modulate the efficiency of pre-mRNA splicing in part through physical bridging of spliceosomal components to H3K4me3. Required for maintaining open chromatin and pluripotency in embryonic stem cells.<ref>PMID:18042460</ref>  
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Human]]
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Chruszcz, M]]
[[Category: Chruszcz M]]
[[Category: Clines, K L]]
[[Category: Clines KL]]
[[Category: Cymborowski, M]]
[[Category: Cymborowski M]]
[[Category: IV, J F.Flanagan]]
[[Category: Flanagan IV JF]]
[[Category: Khorasanizadeh, S]]
[[Category: Khorasanizadeh S]]
[[Category: Kim, Y]]
[[Category: Kim Y]]
[[Category: Mi, L Z]]
[[Category: Mi L-Z]]
[[Category: Minor, W]]
[[Category: Minor W]]
[[Category: Rastinejad, F]]
[[Category: Rastinejad F]]
[[Category: Alpha helix linker]]
[[Category: Chd]]
[[Category: Chromodomain]]
[[Category: Histone h3]]
[[Category: Peptide binding protein]]
[[Category: Three stranded antiparallel beta sheet]]
[[Category: Trimethyllysine]]
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