2qpu: Difference between revisions

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<StructureSection load='2qpu' size='340' side='right'caption='[[2qpu]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='2qpu' size='340' side='right'caption='[[2qpu]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2qpu]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Barley Barley]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QPU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QPU FirstGlance]. <br>
<table><tr><td colspan='2'>[[2qpu]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Hordeum_vulgare Hordeum vulgare]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QPU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QPU FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=QPU:1,5-ANHYDRO-4-O-(4,6-DIDEOXY-4-{[(1S,2S,3S,4R,5S,6R)-2,3,4,6-TETRAHYDROXY-5-METHYLCYCLOHEXYL]AMINO}-ALPHA-D-GLUCOPYRANOSYL)-D-GLUCITOL'>QPU</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=AC1:6-METHYL-5-(4,5,6-TRIHYDROXY-3-HYDROXYMETHYL-CYCLOHEX-2-ENYLAMINO)-TETRAHYDRO-PYRAN-2,3,4-TRIOL'>AC1</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AC1:6-METHYL-5-(4,5,6-TRIHYDROXY-3-HYDROXYMETHYL-CYCLOHEX-2-ENYLAMINO)-TETRAHYDRO-PYRAN-2,3,4-TRIOL'>AC1</scene>, <scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900022:beta-acarbose'>PRD_900022</scene>, <scene name='pdbligand=QPU:1,5-ANHYDRO-4-O-(4,6-DIDEOXY-4-{[(1S,2S,3S,4R,5S,6R)-2,3,4,6-TETRAHYDROXY-5-METHYLCYCLOHEXYL]AMINO}-ALPHA-D-GLUCOPYRANOSYL)-D-GLUCITOL'>QPU</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ht6|1ht6]], [[1p6w|1p6w]], [[1rpk|1rpk]], [[1rp8|1rp8]], [[1rp9|1rp9]], [[1amy|1amy]], [[2qps|2qps]]</div></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AMY1.1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4513 Barley])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Alpha-amylase Alpha-amylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.1 3.2.1.1] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qpu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qpu OCA], [https://pdbe.org/2qpu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qpu RCSB], [https://www.ebi.ac.uk/pdbsum/2qpu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qpu ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qpu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qpu OCA], [https://pdbe.org/2qpu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qpu RCSB], [https://www.ebi.ac.uk/pdbsum/2qpu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qpu ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/AMY1_HORVU AMY1_HORVU]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Alpha-amylase]]
[[Category: Hordeum vulgare]]
[[Category: Barley]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Aghajari, N]]
[[Category: Aghajari N]]
[[Category: Haser, R]]
[[Category: Haser R]]
[[Category: Jensen, M H]]
[[Category: Jensen MH]]
[[Category: Tranier, S]]
[[Category: Tranier S]]
[[Category: Alpha beta 8 barrel]]
[[Category: Carbohydrate metabolism]]
[[Category: Germination]]
[[Category: Glycosidase]]
[[Category: Hydrolase]]
[[Category: Metal-binding]]
[[Category: Secreted]]
[[Category: Sugar tongs mutant complex]]
Retrieved from "https://proteopedia.org/2qpu"