3c7f: Difference between revisions

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<StructureSection load='3c7f' size='340' side='right'caption='[[3c7f]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
<StructureSection load='3c7f' size='340' side='right'caption='[[3c7f]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3c7f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C7F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C7F FirstGlance]. <br>
<table><tr><td colspan='2'>[[3c7f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C7F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C7F FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3c7e|3c7e]], [[3c7g|3c7g]], [[3c7h|3c7h]], [[3c7o|3c7o]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PRD_900117:4beta-beta-xylotriose'>PRD_900117</scene>, <scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">xynD ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Non-reducing_end_alpha-L-arabinofuranosidase Non-reducing end alpha-L-arabinofuranosidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.55 3.2.1.55] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c7f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c7f OCA], [https://pdbe.org/3c7f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c7f RCSB], [https://www.ebi.ac.uk/pdbsum/3c7f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c7f ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c7f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c7f OCA], [https://pdbe.org/3c7f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c7f RCSB], [https://www.ebi.ac.uk/pdbsum/3c7f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c7f ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/XYND_BACSU XYND_BACSU]] Cleaves arabinose units from O-2- or O-3-monosubstituted xylose residues, thereby assisting in arabinoxylan (AX) and short-chain arabinoxylo-oligosaccharide (AXOS) degradation. Is more active on wheat bran AXOS than on wheat water-extractable AX and rye water-extractable AX. Does not display endoxylanase, xylosidase or arabinanase activity.<ref>PMID:17426966</ref>
[https://www.uniprot.org/uniprot/XYND_BACSU XYND_BACSU] Cleaves arabinose units from O-2- or O-3-monosubstituted xylose residues, thereby assisting in arabinoxylan (AX) and short-chain arabinoxylo-oligosaccharide (AXOS) degradation. Is more active on wheat bran AXOS than on wheat water-extractable AX and rye water-extractable AX. Does not display endoxylanase, xylosidase or arabinanase activity.<ref>PMID:17426966</ref>  
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Vibrio subtilis ehrenberg 1835]]
[[Category: Bacillus subtilis]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Non-reducing end alpha-L-arabinofuranosidase]]
[[Category: Bourgois TM]]
[[Category: Bourgois, T M]]
[[Category: Courtin CM]]
[[Category: Campenhout, S Van]]
[[Category: Delcour JA]]
[[Category: Courtin, C M]]
[[Category: Rabijns A]]
[[Category: Delcour, J A]]
[[Category: Strelkov SV]]
[[Category: Rabijns, A]]
[[Category: Van Campenhout S]]
[[Category: Strelkov, S V]]
[[Category: Vandermarliere E]]
[[Category: Vandermarliere, E]]
[[Category: Volckaert G]]
[[Category: Volckaert, G]]
[[Category: Winn MD]]
[[Category: Winn, M D]]
[[Category: 5-bladed beta-propeller fold]]
[[Category: Beta-sandwich]]
[[Category: Hydrolase]]
[[Category: Xylan degradation]]
Retrieved from "https://proteopedia.org/3c7f"