3ei5: Difference between revisions

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<StructureSection load='3ei5' size='340' side='right'caption='[[3ei5]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
<StructureSection load='3ei5' size='340' side='right'caption='[[3ei5]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3ei5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EI5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EI5 FirstGlance]. <br>
<table><tr><td colspan='2'>[[3ei5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EI5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EI5 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PGU:N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-GLUTAMIC+ACID'>PGU</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3ei6|3ei6]], [[3ei7|3ei7]], [[3ei8|3ei8]], [[3ei9|3ei9]], [[3eia|3eia]], [[3eib|3eib]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PGU:N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-GLUTAMIC+ACID'>PGU</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DAP, AGD2, At4g33680, T16L1.170 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/LL-diaminopimelate_aminotransferase LL-diaminopimelate aminotransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.83 2.6.1.83] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ei5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ei5 OCA], [https://pdbe.org/3ei5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ei5 RCSB], [https://www.ebi.ac.uk/pdbsum/3ei5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ei5 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ei5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ei5 OCA], [https://pdbe.org/3ei5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ei5 RCSB], [https://www.ebi.ac.uk/pdbsum/3ei5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ei5 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/DAPAT_ARATH DAPAT_ARATH]] Required for lysine biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Not active with meso-diaminopimelate, lysine or ornithine as substrates.<ref>PMID:16361515</ref> <ref>PMID:21435399</ref>
[https://www.uniprot.org/uniprot/DAPAT_ARATH DAPAT_ARATH] Required for lysine biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Not active with meso-diaminopimelate, lysine or ornithine as substrates.<ref>PMID:16361515</ref> <ref>PMID:21435399</ref>  
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Arath]]
[[Category: Arabidopsis thaliana]]
[[Category: LL-diaminopimelate aminotransferase]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Belkum, M J.van]]
[[Category: Cherney MM]]
[[Category: Cherney, M M]]
[[Category: Clay MD]]
[[Category: Clay, M D]]
[[Category: James MNG]]
[[Category: James, M N.G]]
[[Category: Vederas JC]]
[[Category: Vederas, J C]]
[[Category: Watanabe N]]
[[Category: Watanabe, N]]
[[Category: Van Belkum MJ]]
[[Category: Aminotransferase]]
[[Category: Chloroplast]]
[[Category: External aldimine]]
[[Category: Ll-diaminopimelate]]
[[Category: Lysine biosynthesis]]
[[Category: Pyridoxal 5' phosphate]]
[[Category: Pyridoxal phosphate]]
[[Category: Transferase]]
[[Category: Transit peptide]]
Retrieved from "https://proteopedia.org/3ei5"