3js3: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older editNewer edit →
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
Line 1: Line 1:


==Crystal structure of type I 3-dehydroquinate dehydratase (aroD) from Clostridium difficile with covalent reaction intermediate==
==Crystal structure of type I 3-dehydroquinate dehydratase (aroD) from Clostridium difficile with covalent reaction intermediate==
<StructureSection load='3js3' size='340' side='right' caption='[[3js3]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='3js3' size='340' side='right'caption='[[3js3]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3js3]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridioides_difficile_630 Clostridioides difficile 630]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JS3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3JS3 FirstGlance]. <br>
<table><tr><td colspan='2'>[[3js3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridioides_difficile_630 Clostridioides difficile 630]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JS3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3JS3 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DHS:3-AMINO-4,5-DIHYDROXY-CYCLOHEX-1-ENECARBOXYLATE'>DHS</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">aroD, CD2217 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272563 Clostridioides difficile 630])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DHS:3-AMINO-4,5-DIHYDROXY-CYCLOHEX-1-ENECARBOXYLATE'>DHS</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-dehydroquinate_dehydratase 3-dehydroquinate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.10 4.2.1.10] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3js3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3js3 OCA], [https://pdbe.org/3js3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3js3 RCSB], [https://www.ebi.ac.uk/pdbsum/3js3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3js3 ProSAT], [https://www.topsan.org/Proteins/CSGID/3js3 TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3js3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3js3 OCA], [http://pdbe.org/3js3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3js3 RCSB], [http://www.ebi.ac.uk/pdbsum/3js3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3js3 ProSAT], [http://www.topsan.org/Proteins/CSGID/3js3 TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/AROD_CLOD6 AROD_CLOD6]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/js/3js3_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/js/3js3_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
Line 28: Line 29:
</div>
</div>
<div class="pdbe-citations 3js3" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3js3" style="background-color:#fffaf0;"></div>
==See Also==
*[[Dehydroquinase 3D structures|Dehydroquinase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: 3-dehydroquinate dehydratase]]
[[Category: Clostridioides difficile 630]]
[[Category: Clostridioides difficile 630]]
[[Category: Anderson, W F]]
[[Category: Large Structures]]
[[Category: Structural genomic]]
[[Category: Anderson WF]]
[[Category: Dubrovska, I]]
[[Category: Dubrovska I]]
[[Category: Light, S H]]
[[Category: Light SH]]
[[Category: Minasov, G]]
[[Category: Minasov G]]
[[Category: Peterson, S N]]
[[Category: Peterson SN]]
[[Category: Shuvalova, L]]
[[Category: Shuvalova L]]
[[Category: Winsor, J]]
[[Category: Winsor J]]
[[Category: Amino-acid biosynthesis]]
[[Category: Arod]]
[[Category: Aromatic amino acid biosynthesis]]
[[Category: Covalent reaction intermediate]]
[[Category: Csgid]]
[[Category: Lyase]]
[[Category: Schiff base]]
[[Category: Type i 3-dehydroquinate dehydratase]]
Retrieved from "https://proteopedia.org/3js3"