3pf4: Difference between revisions

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<StructureSection load='3pf4' size='340' side='right'caption='[[3pf4]], [[Resolution|resolution]] 1.38&Aring;' scene=''>
<StructureSection load='3pf4' size='340' side='right'caption='[[3pf4]], [[Resolution|resolution]] 1.38&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3pf4]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PF4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PF4 FirstGlance]. <br>
<table><tr><td colspan='2'>[[3pf4]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PF4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PF4 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.38&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1csp|1csp]], [[2hax|2hax]], [[2es2|2es2]], [[2f52|2f52]], [[1c9o|1c9o]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BSU09100, cspA, cspB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pf4 OCA], [https://pdbe.org/3pf4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pf4 RCSB], [https://www.ebi.ac.uk/pdbsum/3pf4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pf4 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pf4 OCA], [https://pdbe.org/3pf4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pf4 RCSB], [https://www.ebi.ac.uk/pdbsum/3pf4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pf4 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/CSPB_BACSU CSPB_BACSU]] Binds to the pentamer sequences ATTGG and CCAAT with highest affinity in single-stranded DNA, and also to other sequences. Has greater affinity for ATTGG than CCAAT. Can act as transcriptional activator of cold shock genes by recognizing putative ATTGG-box elements present in promoter regions of genes induced under cold shock conditions.  
[https://www.uniprot.org/uniprot/CSPB_BACSU CSPB_BACSU] Binds to the pentamer sequences ATTGG and CCAAT with highest affinity in single-stranded DNA, and also to other sequences. Has greater affinity for ATTGG than CCAAT. Can act as transcriptional activator of cold shock genes by recognizing putative ATTGG-box elements present in promoter regions of genes induced under cold shock conditions.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Vibrio subtilis ehrenberg 1835]]
[[Category: Bacillus subtilis]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Heinemann, U]]
[[Category: Heinemann U]]
[[Category: Max, K E.A]]
[[Category: Max KEA]]
[[Category: Sachs, R]]
[[Category: Sachs R]]
[[Category: Beta barrel]]
[[Category: Cold shock domain]]
[[Category: Cold shock response]]
[[Category: Cytosol]]
[[Category: Gene regulation-rna complex]]
[[Category: Ob fold]]
[[Category: Protein-rna complex]]
[[Category: Rna/dna binding]]
[[Category: Single-stranded rna and dna]]
[[Category: Transcription regulation]]
[[Category: Translation regulation]]
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