Structure superposition tools: Difference between revisions
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Eric Martz (talk | contribs) |
added publication on TopMatch-web (2020) |
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*Server: [http://topmatch.services.came.sbg.ac.at/ TopMatch] | *Server: [http://topmatch.services.came.sbg.ac.at/ TopMatch] | ||
*Publications (both 2008)<ref name="topmatch">PMID: 18174182</ref><ref name="topmatch2">PMID: 18227113</ref>, (2012)<ref name="topmatch3">PMID: 22483118</ref> | *Publications (both 2008)<ref name="topmatch">PMID: 18174182</ref><ref name="topmatch2">PMID: 18227113</ref>, (2012)<ref name="topmatch3">PMID: 22483118</ref>, (2020)<ref name="topmatch4">PMID: 32479639</ref> | ||
*Help on server: YES. | *Help on server: YES. | ||
*Does superposition involve sequence comparison? NO. | *Does superposition involve sequence comparison? NO. | ||
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*Multiple superposition: NO. | *Multiple superposition: NO. | ||
*Structure-based sequence alignment: YES. | *Structure-based sequence alignment: YES. | ||
*Structure neighbors (pre-calculated): NO (but see TopSearch). | *Structure neighbors (pre-calculated): NO (but see [[#TopSearch|TopSearch]]). | ||
*Pairwise superposition including uploaded models: YES | *Pairwise superposition including uploaded models: YES | ||
*Visualization: YES. | *Visualization: YES. | ||
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*Offered by RCSB? NO. | *Offered by RCSB? NO. | ||
*Special features: | *Special features: | ||
**Structure superposition of | **Structure superposition of multichain complexes (of both proteins and nucleic acids). | ||
**You can download the superposition target PDB file (in a separate file from the query PDB file). A PyMOL script is also available, as is the matrix to transform the target coordinates. | **You can download the superposition target PDB file (in a separate file from the query PDB file). A PyMOL script is also available, as is the matrix to transform the target coordinates. | ||
