6bm7: Difference between revisions

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<StructureSection load='6bm7' size='340' side='right'caption='[[6bm7]], [[Resolution|resolution]] 2.98&Aring;' scene=''>
<StructureSection load='6bm7' size='340' side='right'caption='[[6bm7]], [[Resolution|resolution]] 2.98&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6bm7]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Tryb2 Tryb2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BM7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6BM7 FirstGlance]. <br>
<table><tr><td colspan='2'>[[6bm7]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_brucei_brucei_TREU927 Trypanosoma brucei brucei TREU927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BM7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6BM7 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=B3P:2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>B3P</scene>, <scene name='pdbligand=DY7:2-amino-4-[(3,5-dibromophenyl)amino]-6-methylpyrimidin-1-ium'>DY7</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=PUT:1,4-DIAMINOBUTANE'>PUT</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.98&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=B3P:2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>B3P</scene>, <scene name='pdbligand=DY7:2-amino-4-[(3,5-dibromophenyl)amino]-6-methylpyrimidin-1-ium'>DY7</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=PUT:1,4-DIAMINOBUTANE'>PUT</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Tb927.6.4410, Tb927.6.4460 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=185431 TRYB2])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6bm7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6bm7 OCA], [https://pdbe.org/6bm7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6bm7 RCSB], [https://www.ebi.ac.uk/pdbsum/6bm7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6bm7 ProSAT]</span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenosylmethionine_decarboxylase Adenosylmethionine decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.50 4.1.1.50] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6bm7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6bm7 OCA], [http://pdbe.org/6bm7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6bm7 RCSB], [http://www.ebi.ac.uk/pdbsum/6bm7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6bm7 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/DCAMP_TRYBB DCAMP_TRYBB]] Probably has no catalytic activity due to the loss of several residues required for processing and catalysis (PubMed:17485680). Forms a complex with S-adenosylmethionine decarboxylase AdoMetDC which is essential to activate AdoMetDC (PubMed:17485680, PubMed:18949025). Required for the biosynthesis of the polyamine spermidine (PubMed:18949025). Required for growth and survival during the bloodstream life cycle stage (PubMed:18949025).<ref>PMID:17485680</ref> <ref>PMID:18949025</ref> 
[https://www.uniprot.org/uniprot/Q587A7_TRYB2 Q587A7_TRYB2]  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Adenosylmethionine decarboxylase]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Tryb2]]
[[Category: Trypanosoma brucei brucei TREU927]]
[[Category: Chen, Z]]
[[Category: Chen Z]]
[[Category: Phillips, M A]]
[[Category: Phillips MA]]
[[Category: Volkov, O A]]
[[Category: Volkov OA]]
[[Category: Adometdc]]
[[Category: Decarboxylase]]
[[Category: Inhibitor]]
[[Category: Lyase-lyase inhibitor complex]]
[[Category: Prozyme]]
[[Category: Trypanosoma]]

Latest revision as of 14:45, 4 October 2023

Crystal structure of Trypanosoma brucei AdoMetDC/prozyme heterodimer in complex with pyrimidineamine inhibitor UTSAM568

6bm7, resolution 2.98Å

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