6dhe: Difference between revisions
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<StructureSection load='6dhe' size='340' side='right'caption='[[6dhe]], [[Resolution|resolution]] 2.05Å' scene=''> | <StructureSection load='6dhe' size='340' side='right'caption='[[6dhe]], [[Resolution|resolution]] 2.05Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[6dhe]] is a | <table><tr><td colspan='2'>[[6dhe]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus_BP-1 Thermosynechococcus vestitus BP-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DHE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DHE FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8CT:(6R,11cis,11cis,13cis,15cis)-4,5-didehydro-5,6-dihydro-beta,beta-carotene'>8CT</scene>, <scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=OEX:CA-MN4-O5+CLUSTER'>OEX</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8CT:(6R,11cis,11cis,13cis,15cis)-4,5-didehydro-5,6-dihydro-beta,beta-carotene'>8CT</scene>, <scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FME:N-FORMYLMETHIONINE'>FME</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=OEX:CA-MN4-O5+CLUSTER'>OEX</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dhe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dhe OCA], [https://pdbe.org/6dhe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dhe RCSB], [https://www.ebi.ac.uk/pdbsum/6dhe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dhe ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dhe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dhe OCA], [https://pdbe.org/6dhe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dhe RCSB], [https://www.ebi.ac.uk/pdbsum/6dhe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dhe ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[https://www.uniprot.org/uniprot/PSBB_THEVB PSBB_THEVB] One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation.[HAMAP-Rule:MF_01495]<ref>PMID:20558739</ref> <ref>PMID:21367867</ref> <ref>PMID:25006873</ref> | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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</div> | </div> | ||
<div class="pdbe-citations 6dhe" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 6dhe" style="background-color:#fffaf0;"></div> | ||
==See Also== | |||
*[[Photosystem II 3D structures|Photosystem II 3D structures]] | |||
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Thermosynechococcus vestitus BP-1]] | |||
[[Category: Adams PD]] | |||
[[Category: Thermosynechococcus | [[Category: Aller P]] | ||
[[Category: Adams | [[Category: Alonso-Mori R]] | ||
[[Category: Aller | [[Category: Batyuk A]] | ||
[[Category: Alonso-Mori | [[Category: Bergmann U]] | ||
[[Category: Batyuk | [[Category: Boutet S]] | ||
[[Category: Bergmann | [[Category: Brewster AS]] | ||
[[Category: Boutet | [[Category: Butryn A]] | ||
[[Category: Brewster | [[Category: Carbajo S]] | ||
[[Category: Butryn | [[Category: Chatterjee R]] | ||
[[Category: Carbajo | [[Category: Cheah MH]] | ||
[[Category: Chatterjee | [[Category: Dobbek H]] | ||
[[Category: Cheah | [[Category: Douthit L]] | ||
[[Category: Dobbek | [[Category: Fransson T]] | ||
[[Category: Douthit | [[Category: Fuller FD]] | ||
[[Category: Fransson | [[Category: Gul S]] | ||
[[Category: Fuller | [[Category: Holton JM]] | ||
[[Category: Gul | [[Category: Hussein R]] | ||
[[Category: Holton | [[Category: Ibrahim M]] | ||
[[Category: Hussein | [[Category: Kern J]] | ||
[[Category: Ibrahim | [[Category: Koglin JE]] | ||
[[Category: Kern | [[Category: Kroll T]] | ||
[[Category: Koglin | [[Category: Lassalle L]] | ||
[[Category: Kroll | [[Category: Liang M]] | ||
[[Category: Lassalle | [[Category: Messinger J]] | ||
[[Category: Liang | [[Category: Moriarty NW]] | ||
[[Category: Orville AM]] | |||
[[Category: Messinger | [[Category: Pastor E]] | ||
[[Category: Moriarty | [[Category: Sauter NK]] | ||
[[Category: Orville | [[Category: Seufert I]] | ||
[[Category: Pastor | [[Category: Shevela D]] | ||
[[Category: Sauter | [[Category: Sierra RG]] | ||
[[Category: Seufert | [[Category: Sokaras D]] | ||
[[Category: Shevela | [[Category: Weninger C]] | ||
[[Category: Sierra | [[Category: Wersig J]] | ||
[[Category: Sokaras | [[Category: Yachandra VK]] | ||
[[Category: Weninger | [[Category: Yano J]] | ||
[[Category: Wersig | [[Category: Young ID]] | ||
[[Category: Yachandra | [[Category: Zhang M]] | ||
[[Category: Yano | [[Category: Zouni A]] | ||
[[Category: Young | [[Category: De Lichtenberg C]] | ||
[[Category: Zhang | |||
[[Category: Zouni | |||
[[Category: | |||